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Sample GSM5924030

Query DataSets for GSM5924030

Status

Public on Mar 03, 2022

Title

ccRCC tumor ffpe_c_2

Sample type

SRA

Source name

fresh ccRCC human tumor

Organism

Homo sapiens

Characteristics

disease state: renal cell cancer
tissue: ccRCC tumor

Extracted molecule

total RNA

Extraction protocol

RNA extraction with the 10X Visium protocol
Libraries preparation with illumina Truseq kit

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina NovaSeq 6000

Data processing

Raw fatsqs were processed with SpaceRranger
Genome_build: hg38
Supplementary_files_format_and_content: matrices, images and json files

Submission date

Feb 28, 2022

Last update date

Apr 19, 2022

Contact name

Maxime Meylan

Organization name

UMRS 1138 - Centre de Recherche des Cordeliers

Street address

15 rue de l'école de Médecine

City

Paris

State/province

Paris

ZIP/Postal code

75006

Country

France

Platform ID

GPL24676

Series (1)

GSE175540

Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer

Supplementary file	Size	Download	File type/resource
GSM5924030_ffpe_c_2_TLS_annotation.csv.gz	24.3 Kb	(ftp)(http)	CSV
GSM5924030_ffpe_c_2_aligned_fiducials.jpg.gz	2.5 Mb	(ftp)(http)	JPG
GSM5924030_ffpe_c_2_detected_tissue_image.jpg.gz	2.7 Mb	(ftp)(http)	JPG
GSM5924030_ffpe_c_2_filtered_feature_bc_matrix.h5	16.6 Mb	(ftp)(http)	H5
GSM5924030_ffpe_c_2_raw_feature_bc_matrix.h5	24.1 Mb	(ftp)(http)	H5
GSM5924030_ffpe_c_2_scalefactors_json.json.gz	170 b	(ftp)(http)	JSON
GSM5924030_ffpe_c_2_tissue_hires_image.png.gz	7.6 Mb	(ftp)(http)	PNG
GSM5924030_ffpe_c_2_tissue_lowres_image.png.gz	695.7 Kb	(ftp)(http)	PNG
GSM5924030_ffpe_c_2_tissue_positions_list.csv.gz	52.1 Kb	(ftp)(http)	CSV
Processed data provided as supplementary file
Raw data not provided for this record
Processed data are available on Series record