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Sample GSM5733463 Query DataSets for GSM5733463
Status Public on Dec 15, 2021
Title SAMPLE 29
Sample type RNA
 
Source name Test
Organism Arundo donax
Characteristics treatment: Alkali treatment
tissue: leaves
time: 6h
Extracted molecule total RNA
Extraction protocol the total RNA from each sample was isolated using the SteadyPure Universal RNA Extraction Kit
Label SYBR Green
Label protocol RT-qPCR amplification was performed in the Applied Biosystems Stepone system (Thermo, USA). The real-time PCR volume of 10 µL contained 5 µL 2X SYBR® Green Pro Taq HS Premix (Accurate Biology, China), 0.5 µL primer F (5 µmol·L−1), 0.5 µL primer R (5 µmol·L−1), 1.5 µL cDNA, 2.3 µL ddH2O, and 0.2 µL Reference Dye. RT-qPCR conditions were set as follows: 95 °C for 30 s, 40 cycles (95 °C for 5 s, 60 °C for 30 s), and an infinite hold at 10 °C. The melting curves ranging from 60 °C to 95 °C were evaluated in each reaction to confirm the specificity of amplified products.
 
Hybridization protocol n/a
Scan protocol n/a
Data processing For the normalization it uses the most stable reference genes
For the normalization it uses combinations of the most stable reference genes
For the normalization it uses the least stable reference genes
Matrix normalized worksheet reports normalized signal (against housekeeping genes)
 
Submission date Dec 14, 2021
Last update date Dec 15, 2021
Contact name deng zhang
E-mail(s) zhangdeng1993@sina.com
Phone 18320411687
Organization name Guangxi Institute of Botany
Street address No. 85, Yanshan street, Yanshan District, Guilin, Guangxi
City Guilin
ZIP/Postal code 541000
Country China
 
Platform ID GPL31093
Series (1)
GSE190890 Internal reference gene selection under salt, alkali, and drought stresses in ecological remediation plant giant reed

Data table header descriptions
ID_REF
VALUE non-normalized

Data table
ID_REF VALUE
ACT1 26.31406064
ACT2 24.62452274
ACT7 25.63248783
APT1 23.58197615
FPS2 28.95113436
GAPDH 27.96899986
GAPDH3 24.63515494
RAN2 27.46816667
RAN3 25.23488426
RPL4 25.83759922
RPL5 25.37807126
RPL6 23.7224848
RPS1 25.00312318
RPS5 23.89503225
SAMDC2 21.70844205
SAMDC3 25.79102728
TUBA2 24.37276056
TUBA3 23.72350385
UBC2 25.14605734
UBC7 30.61233817

Total number of rows: 26

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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