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Sample GSM5733459 Query DataSets for GSM5733459
Status Public on Dec 15, 2021
Title SAMPLE 25
Sample type RNA
 
Source name Test
Organism Arundo donax
Characteristics treatment: Alkali treatment
tissue: roots
time: 12h
Extracted molecule total RNA
Extraction protocol the total RNA from each sample was isolated using the SteadyPure Universal RNA Extraction Kit
Label SYBR Green
Label protocol RT-qPCR amplification was performed in the Applied Biosystems Stepone system (Thermo, USA). The real-time PCR volume of 10 µL contained 5 µL 2X SYBR® Green Pro Taq HS Premix (Accurate Biology, China), 0.5 µL primer F (5 µmol·L−1), 0.5 µL primer R (5 µmol·L−1), 1.5 µL cDNA, 2.3 µL ddH2O, and 0.2 µL Reference Dye. RT-qPCR conditions were set as follows: 95 °C for 30 s, 40 cycles (95 °C for 5 s, 60 °C for 30 s), and an infinite hold at 10 °C. The melting curves ranging from 60 °C to 95 °C were evaluated in each reaction to confirm the specificity of amplified products.
 
Hybridization protocol n/a
Scan protocol n/a
Data processing For the normalization it uses the most stable reference genes
For the normalization it uses combinations of the most stable reference genes
For the normalization it uses the least stable reference genes
Matrix normalized worksheet reports normalized signal (against housekeeping genes)
 
Submission date Dec 14, 2021
Last update date Dec 15, 2021
Contact name deng zhang
E-mail(s) zhangdeng1993@sina.com
Phone 18320411687
Organization name Guangxi Institute of Botany
Street address No. 85, Yanshan street, Yanshan District, Guilin, Guangxi
City Guilin
ZIP/Postal code 541000
Country China
 
Platform ID GPL31093
Series (1)
GSE190890 Internal reference gene selection under salt, alkali, and drought stresses in ecological remediation plant giant reed

Data table header descriptions
ID_REF
VALUE non-normalized

Data table
ID_REF VALUE
ACT1 22.71782642
ACT2 23.61205906
ACT7 25.16430643
APT1 24.01538361
FPS2 29.35985141
GAPDH 25.69560772
GAPDH3 24.69346587
RAN2 28.42880291
RAN3 26.58177757
RPL4 33.63115501
RPL5 31.70519998
RPL6 30.25407643
RPS1 31.11004342
RPS5 29.912554
SAMDC2 21.29096031
SAMDC3 28.9420325
TUBA2 28.68903902
TUBA3 24.99178484
UBC2 25.93852425
UBC7 30.87726381

Total number of rows: 26

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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