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Sample GSM5733457 Query DataSets for GSM5733457
Status Public on Dec 15, 2021
Title SAMPLE 23
Sample type RNA
 
Source name Test
Organism Arundo donax
Characteristics treatment: Alkali treatment
tissue: roots
time: 3h
Extracted molecule total RNA
Extraction protocol the total RNA from each sample was isolated using the SteadyPure Universal RNA Extraction Kit
Label SYBR Green
Label protocol RT-qPCR amplification was performed in the Applied Biosystems Stepone system (Thermo, USA). The real-time PCR volume of 10 µL contained 5 µL 2X SYBR® Green Pro Taq HS Premix (Accurate Biology, China), 0.5 µL primer F (5 µmol·L−1), 0.5 µL primer R (5 µmol·L−1), 1.5 µL cDNA, 2.3 µL ddH2O, and 0.2 µL Reference Dye. RT-qPCR conditions were set as follows: 95 °C for 30 s, 40 cycles (95 °C for 5 s, 60 °C for 30 s), and an infinite hold at 10 °C. The melting curves ranging from 60 °C to 95 °C were evaluated in each reaction to confirm the specificity of amplified products.
 
Hybridization protocol n/a
Scan protocol n/a
Data processing For the normalization it uses the most stable reference genes
For the normalization it uses combinations of the most stable reference genes
For the normalization it uses the least stable reference genes
Matrix normalized worksheet reports normalized signal (against housekeeping genes)
 
Submission date Dec 14, 2021
Last update date Dec 15, 2021
Contact name deng zhang
E-mail(s) zhangdeng1993@sina.com
Phone 18320411687
Organization name Guangxi Institute of Botany
Street address No. 85, Yanshan street, Yanshan District, Guilin, Guangxi
City Guilin
ZIP/Postal code 541000
Country China
 
Platform ID GPL31093
Series (1)
GSE190890 Internal reference gene selection under salt, alkali, and drought stresses in ecological remediation plant giant reed

Data table header descriptions
ID_REF
VALUE non-normalized

Data table
ID_REF VALUE
ACT1 24.15732786
ACT2 22.30884552
ACT7 24.15646214
APT1 21.62717968
FPS2 28.8454238
GAPDH 23.25805346
GAPDH3 22.53647338
RAN2 29.32245784
RAN3 25.85481326
RPL4 31.55576939
RPL5 30.25084559
RPL6 29.39804395
RPS1 32.39668825
RPS5 29.81158935
SAMDC2 21.05501938
SAMDC3 28.6504311
TUBA2 28.08952183
TUBA3 22.65241432
UBC2 25.01932907
UBC7 30.88702032

Total number of rows: 26

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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