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Sample GSM5733450 Query DataSets for GSM5733450
Status Public on Dec 15, 2021
Title SAMPLE 16
Sample type RNA
 
Source name Test
Organism Arundo donax
Characteristics treatment: Drought treatment
tissue: roots
time: 24h
Extracted molecule total RNA
Extraction protocol the total RNA from each sample was isolated using the SteadyPure Universal RNA Extraction Kit
Label SYBR Green
Label protocol RT-qPCR amplification was performed in the Applied Biosystems Stepone system (Thermo, USA). The real-time PCR volume of 10 µL contained 5 µL 2X SYBR® Green Pro Taq HS Premix (Accurate Biology, China), 0.5 µL primer F (5 µmol·L−1), 0.5 µL primer R (5 µmol·L−1), 1.5 µL cDNA, 2.3 µL ddH2O, and 0.2 µL Reference Dye. RT-qPCR conditions were set as follows: 95 °C for 30 s, 40 cycles (95 °C for 5 s, 60 °C for 30 s), and an infinite hold at 10 °C. The melting curves ranging from 60 °C to 95 °C were evaluated in each reaction to confirm the specificity of amplified products.
 
Hybridization protocol n/a
Scan protocol n/a
Data processing For the normalization it uses the most stable reference genes
For the normalization it uses combinations of the most stable reference genes
For the normalization it uses the least stable reference genes
Matrix normalized worksheet reports normalized signal (against housekeeping genes)
 
Submission date Dec 14, 2021
Last update date Dec 15, 2021
Contact name deng zhang
E-mail(s) zhangdeng1993@sina.com
Phone 18320411687
Organization name Guangxi Institute of Botany
Street address No. 85, Yanshan street, Yanshan District, Guilin, Guangxi
City Guilin
ZIP/Postal code 541000
Country China
 
Platform ID GPL31093
Series (1)
GSE190890 Internal reference gene selection under salt, alkali, and drought stresses in ecological remediation plant giant reed

Data table header descriptions
ID_REF
VALUE non-normalized

Data table
ID_REF VALUE
ACT1 24.06076262
ACT2 22.58709145
ACT7 23.93444549
APT1 22.66075283
FPS2 26.80949953
GAPDH 24.92617861
GAPDH3 21.70434613
RAN2 25.61154111
RAN3 22.99519327
RPL4 30.47831366
RPL5 28.29753727
RPL6 27.6207038
RPS1 27.83314959
RPS5 28.55310906
SAMDC2 19.7734517
SAMDC3 26.44921388
TUBA2 25.76577759
TUBA3 22.93540467
UBC2 24.53487714
UBC7 29.08986833

Total number of rows: 26

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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