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Sample GSM5733435 Query DataSets for GSM5733435
Status Public on Dec 15, 2021
Title SAMPLE 1
Sample type RNA
 
Source name Control
Organism Arundo donax
Characteristics treatment: No treatment
tissue: roots
time: 0 h
Extracted molecule total RNA
Extraction protocol the total RNA from each sample was isolated using the SteadyPure Universal RNA Extraction Kit
Label SYBR Green
Label protocol RT-qPCR amplification was performed in the Applied Biosystems Stepone system (Thermo, USA). The real-time PCR volume of 10 µL contained 5 µL 2X SYBR® Green Pro Taq HS Premix (Accurate Biology, China), 0.5 µL primer F (5 µmol·L−1), 0.5 µL primer R (5 µmol·L−1), 1.5 µL cDNA, 2.3 µL ddH2O, and 0.2 µL Reference Dye. RT-qPCR conditions were set as follows: 95 °C for 30 s, 40 cycles (95 °C for 5 s, 60 °C for 30 s), and an infinite hold at 10 °C. The melting curves ranging from 60 °C to 95 °C were evaluated in each reaction to confirm the specificity of amplified products.
 
Hybridization protocol n/a
Scan protocol n/a
Data processing For the normalization it uses the most stable reference genes
For the normalization it uses combinations of the most stable reference genes
For the normalization it uses the least stable reference genes
Matrix normalized worksheet reports normalized signal (against housekeeping genes)
 
Submission date Dec 14, 2021
Last update date Dec 15, 2021
Contact name deng zhang
E-mail(s) zhangdeng1993@sina.com
Phone 18320411687
Organization name Guangxi Institute of Botany
Street address No. 85, Yanshan street, Yanshan District, Guilin, Guangxi
City Guilin
ZIP/Postal code 541000
Country China
 
Platform ID GPL31093
Series (1)
GSE190890 Internal reference gene selection under salt, alkali, and drought stresses in ecological remediation plant giant reed

Data table header descriptions
ID_REF
VALUE non-normalized

Data table
ID_REF VALUE
ACT1 22.32031335
ACT2 19.23986901
ACT7 19.43674745
APT1 17.31349161
FPS2 25.4840605
GAPDH 21.63482454
GAPDH3 19.42910428
RAN2 27.3429131
RAN3 21.81553798
RPL4 29.10924043
RPL5 26.38156033
RPL6 25.53255992
RPS1 27.06705369
RPS5 26.24155045
SAMDC2 17.28975042
SAMDC3 23.76698812
TUBA2 22.48232439
TUBA3 18.21525659
UBC2 21.06557274
UBC7 28.30696424

Total number of rows: 26

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data are available on Series record

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