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GEO accession:
Sample GSM5669556
Query DataSets for GSM5669556
Status
Public on Nov 04, 2021
Title
Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCLB732PSH)
Sample type
SRA
Source name
Homo sapiens CD8-positive naive resting alpha-beta T primary cell
Organism
Homo sapiens
Characteristics
antibody: H3K36me3
cell_type: CD8-positive naive resting alpha-beta T cell
biomaterial_type: primary cell
biosample encode accession: ENCBS749OUL (SAMN22818980)
Sex: not collected
dev stage: unknown
age: unknown
donor_id: ENCDO930DIF
lab: Bradley Bernstein, Broad
source: John Stamatoyannopoulos
link: ENCBS749OUL at ENCODE;
https://www.encodeproject.org/ENCBS749OUL/
link: Derived from ENCODE donor ENCDO930DIF;
https://www.encodeproject.org/ENCDO930DIF/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/59eca314-f378-4bd8-a437-49f823e217be/@@download/attachment/MINT%20ChIP%20Protocol%20-%20Bernstein%20ENCODE.pdf
general protocol:
https://www.encodeproject.org/documents/fc792518-31dc-4829-81d3-4dc9299c91bf/@@download/attachment/Bernstein-mint-chip3-a-low-input-chip-seq-protocol-using-multiplexed-chromatin-and-T7-amplificationn.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina NextSeq 500
Description
https://www.encodeproject.org/experiments/ENCSR654ZYD/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 Mint-ChIP-seq on CD8-positive naive resting alpha-beta T cell
experiment encode accession: ENCSR654ZYD
assay title: Mint-ChIP-seq
assembly: GRCh38
possible controls: ENCSR810LRH
encode release date: 2021-06-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB732PSH
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Nov 03, 2021
Last update date
Nov 06, 2021
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL18573
Series (1)
GSE187785
Mint-ChIP-seq from CD8-positive naive resting alpha-beta T cell (ENCSR654ZYD)
Relations
BioSample
SAMN22818980
SRA
SRX13008483
Supplementary file
Size
Download
File type/resource
GSM5669556_ENCLB732PSH_README.txt.gz
713 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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