|
Status |
Public on Nov 29, 2021 |
Title |
genomic DNA from anal sample T_475 |
Sample type |
genomic |
|
|
Source name |
anal sample T_475
|
Organism |
Homo sapiens |
Characteristics |
sample type: Tumor
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Genome-wide methylation was interrogated using the Infinium HumanMethylation450K BeadChip (HM450) following the manufacturer’s specifications
|
Scan protocol |
chips were scanned on a single HiScanSQ System (Illumina Inc.)
|
Data processing |
Raw IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package
|
|
|
Submission date |
Oct 29, 2021 |
Last update date |
Nov 29, 2021 |
Contact name |
Eric Haura |
Organization name |
Moffitt cancer Center
|
Street address |
12902 USF Magnolia Drive,
|
City |
Tampa |
State/province |
Fl |
ZIP/Postal code |
33612 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE186858 |
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [anal] |
GSE186859 |
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma |
|