|
| Status |
Public on Nov 29, 2021 |
| Title |
genomic DNA from anal sample T_556 |
| Sample type |
genomic |
| |
|
| Source name |
anal sample T_556
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Tumor
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Genome-wide methylation was interrogated using the Infinium HumanMethylation450K BeadChip (HM450) following the manufacturer’s specifications
|
| Scan protocol |
chips were scanned on a single HiScanSQ System (Illumina Inc.)
|
| Data processing |
Raw IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package
|
| |
|
| Submission date |
Oct 29, 2021 |
| Last update date |
Nov 29, 2021 |
| Contact name |
Eric Haura |
| Organization name |
Moffitt cancer Center
|
| Street address |
12902 USF Magnolia Drive,
|
| City |
Tampa |
| State/province |
Fl |
| ZIP/Postal code |
33612 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE186858 |
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [anal] |
| GSE186859 |
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma |
|
