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GEO accession:
Sample GSM5662092
Query DataSets for GSM5662092
Status
Public on Nov 29, 2021
Title
genomic DNA from cervical sample N_09
Sample type
genomic
Source name
cervical sample N_09
Organism
Homo sapiens
Characteristics
sample type: Normal
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
Label
Cy5, Cy3
Label protocol
standard Illumina protocol
Hybridization protocol
standard Illumina protocol
Scan protocol
chips were scanned on a single HiScanSQ System (Illumina Inc.)
Data processing
IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package.
Submission date
Oct 29, 2021
Last update date
Nov 29, 2021
Contact name
Eric Haura
Organization name
Moffitt cancer Center
Street address
12902 USF Magnolia Drive,
City
Tampa
State/province
Fl
ZIP/Postal code
33612
Country
USA
Platform ID
GPL13534
Series (2)
GSE186835
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [cervical]
GSE186859
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma
Data table header descriptions
ID_REF
VALUE
Average Beta or normalized (provide the normalization method) Average Beta
DETECTION P-VALUE
Data table
ID_REF
VALUE
DETECTION P-VALUE
cg00050873
0.801407871
0
cg00212031
0
0.733228547
cg00213748
0.267156727
0.329601724
cg00214611
0
0.888629468
cg00455876
0.2664017
0
cg01707559
0.167956477
0
cg02004872
0.057271917
0
cg02011394
0.898131052
0
cg02050847
0.397319059
0.011886036
cg02233190
0
8.09E-05
cg02494853
0.030314678
0
cg02839557
0.230162871
0.225930339
cg02842889
0.143863196
0.598633395
cg03052502
0.682853304
2.36E-12
cg03155755
0.66339113
2.07E-13
cg03244189
0.146677814
0
cg03443143
0.710702599
0
cg03683899
0
0.544752869
cg03695421
0.275915633
8.19E-06
cg03706273
0.039228745
0
Total number of rows:
485512
Table truncated, full table size
11785 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM5662092_8959312026_R04C02_Grn.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
GSM5662092_8959312026_R04C02_Red.idat.gz
4.1 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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