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GEO accession:
Sample GSM5662088
Query DataSets for GSM5662088
Status
Public on Nov 29, 2021
Title
genomic DNA from cervical sample C3_04
Sample type
genomic
Source name
cervical sample C3_04
Organism
Homo sapiens
Characteristics
sample type: CIN3
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
Label
Cy5, Cy3
Label protocol
standard Illumina protocol
Hybridization protocol
standard Illumina protocol
Scan protocol
chips were scanned on a single HiScanSQ System (Illumina Inc.)
Data processing
IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package.
Submission date
Oct 29, 2021
Last update date
Nov 29, 2021
Contact name
Eric Haura
Organization name
Moffitt cancer Center
Street address
12902 USF Magnolia Drive,
City
Tampa
State/province
Fl
ZIP/Postal code
33612
Country
USA
Platform ID
GPL13534
Series (2)
GSE186835
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [cervical]
GSE186859
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma
Data table header descriptions
ID_REF
VALUE
Average Beta or normalized (provide the normalization method) Average Beta
DETECTION P-VALUE
Data table
ID_REF
VALUE
DETECTION P-VALUE
cg00050873
0.478863164
0.146352619
cg00212031
0.155958661
0.580177359
cg00213748
0.094215648
0.143280679
cg00214611
0.172402372
0.299408394
cg00455876
0.053303594
2.73E-12
cg01707559
0.17557692
0
cg02004872
0.183072704
0
cg02011394
0.213399635
0.378179437
cg02050847
0.140873783
0.186006687
cg02233190
0.114776316
1.74E-08
cg02494853
0.04706575
0
cg02839557
0.02906717
0.671899344
cg02842889
0.355084268
0.436951158
cg03052502
0.004125099
0.483859433
cg03155755
0.307757757
0.026036281
cg03244189
0.244489779
0
cg03443143
0.242188232
0.201473802
cg03683899
0.105701197
0.151135839
cg03695421
0.210495772
2.38E-05
cg03706273
0.06351304
0
Total number of rows:
485512
Table truncated, full table size
11806 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM5662088_8959312026_R02C02_Grn.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
GSM5662088_8959312026_R02C02_Red.idat.gz
4.1 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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