GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM5662085
Query DataSets for GSM5662085
Status
Public on Nov 29, 2021
Title
genomic DNA from cervical sample T_05
Sample type
genomic
Source name
cervical sample T_05
Organism
Homo sapiens
Characteristics
sample type: Tumor
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
Label
Cy5, Cy3
Label protocol
standard Illumina protocol
Hybridization protocol
standard Illumina protocol
Scan protocol
chips were scanned on a single HiScanSQ System (Illumina Inc.)
Data processing
IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package.
Submission date
Oct 29, 2021
Last update date
Nov 29, 2021
Contact name
Eric Haura
Organization name
Moffitt cancer Center
Street address
12902 USF Magnolia Drive,
City
Tampa
State/province
Fl
ZIP/Postal code
33612
Country
USA
Platform ID
GPL13534
Series (2)
GSE186835
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [cervical]
GSE186859
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma
Data table header descriptions
ID_REF
VALUE
Average Beta or normalized (provide the normalization method) Average Beta
DETECTION P-VALUE
Data table
ID_REF
VALUE
DETECTION P-VALUE
cg00050873
0.381853403
0.267220373
cg00212031
0
0.528300735
cg00213748
0.220021384
0.110337876
cg00214611
0.28162992
0.535359219
cg00455876
0.195158229
1.89E-15
cg01707559
0.239763297
0
cg02004872
0.117435015
0
cg02011394
0.134208712
0.09451029
cg02050847
0
0.790854261
cg02233190
0.134511942
4.58E-05
cg02494853
0.342548402
0
cg02839557
0
0.973487882
cg02842889
0.04121335
0.926492368
cg03052502
0.037526814
0.584335381
cg03155755
0.406622796
1.59E-07
cg03244189
0.194794938
0
cg03443143
0.315052005
0.007889947
cg03683899
0
0.513451594
cg03695421
0.184980473
7.08E-07
cg03706273
0.042652008
0
Total number of rows:
485512
Table truncated, full table size
11793 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM5662085_8959312026_R01C01_Grn.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
GSM5662085_8959312026_R01C01_Red.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
