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GEO accession:
Sample GSM5662076
Query DataSets for GSM5662076
Status
Public on Nov 29, 2021
Title
genomic DNA from cervical sample N_01
Sample type
genomic
Source name
cervical sample N_01
Organism
Homo sapiens
Characteristics
sample type: Normal
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted using QIAamp DNA extraction kit (QIAGEN, Valencia, CA)
Label
Cy5, Cy3
Label protocol
standard Illumina protocol
Hybridization protocol
standard Illumina protocol
Scan protocol
chips were scanned on a single HiScanSQ System (Illumina Inc.)
Data processing
IDAT files were processed, background corrected and normalized using control probes in R using the minfi bioconductor package.
Submission date
Oct 29, 2021
Last update date
Nov 29, 2021
Contact name
Eric Haura
Organization name
Moffitt cancer Center
Street address
12902 USF Magnolia Drive,
City
Tampa
State/province
Fl
ZIP/Postal code
33612
Country
USA
Platform ID
GPL13534
Series (2)
GSE186835
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma [cervical]
GSE186859
Genome-Wide Host Methylation Profiling of Anal and Cervical Carcinoma
Data table header descriptions
ID_REF
VALUE
Average Beta or normalized (provide the normalization method) Average Beta
DETECTION P-VALUE
Data table
ID_REF
VALUE
DETECTION P-VALUE
cg00050873
0.401758075
0.470595734
cg00212031
0
0.978487761
cg00213748
0.211382214
0.379943711
cg00214611
0.078961979
0.94656846
cg00455876
0
0.006066325
cg01707559
0.166130483
0
cg02004872
0.039154785
6.91E-10
cg02011394
0.226238396
0.404237009
cg02050847
0
0.941732876
cg02233190
0.117518206
9.36E-05
cg02494853
0.021736362
0
cg02839557
0
0.763203857
cg02842889
0.26050609
0.864884984
cg03052502
0
0.99186659
cg03155755
0.271665794
0.55864901
cg03244189
0.179836254
3.11E-09
cg03443143
0.382192502
0.141194159
cg03683899
0.022724047
0.382724719
cg03695421
0.04716518
0.058267124
cg03706273
0.01945972
0
Total number of rows:
485512
Table truncated, full table size
11760 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM5662076_8942334092_R02C01_Grn.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
GSM5662076_8942334092_R02C01_Red.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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