|
| Status |
Public on Mar 04, 2022 |
| Title |
6 [miRNA-Seq] |
| Sample type |
SRA |
| |
|
| Source name |
pancreas
|
| Organism |
Mus musculus |
| Characteristics |
cell type: mesenchymal stromal cells
strain: C57BL/6J
|
| Treatment protocol |
no treatment
|
| Growth protocol |
4-day expansion after isolation and FACS sorting
|
| Extracted molecule |
total RNA |
| Extraction protocol |
miRNeasy Mini Kit
done by company BGI
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
filtering of data performed by BGI
mapping done by BGI using Bowtie2
sRNA classification and prediction done by BGI
Supplementary_files_format_and_content: Matrix table with raw counts and TPM values for every small RNA and every sample
|
| |
|
| Submission date |
Aug 17, 2021 |
| Last update date |
Mar 04, 2022 |
| Contact name |
Annette Schürmann |
| E-mail(s) |
schuermann@dife.de
|
| Organization name |
German Institute of Human Nutrition Potsdam-Rehbruecke
|
| Department |
Department of Experimental Diabetology
|
| Street address |
Arthur-Scheunert-Allee 114-116
|
| City |
Nuthetal |
| State/province |
BRB |
| ZIP/Postal code |
14558 |
| Country |
Germany |
| |
|
| Platform ID |
GPL23479 |
| Series (2) |
| GSE182242 |
Distinct adipogenic and fibrogenic differentiation capacities of mesenchymal stromal cells from pancreas and white adipose tissue [miRNA-Seq] |
| GSE182243 |
Distinct adipogenic and fibrogenic differentiation capacities of mesenchymal stromal cells from pancreas and white adipose tissue |
|
| Relations |
| BioSample |
SAMN20828988 |
| SRA |
SRX11797873 |
