|
| Status |
Public on Oct 27, 2011 |
| Title |
DGM-00167 [gene_expr] |
| Sample type |
RNA |
| |
|
| Source name |
small airway epithelium from healthy nonsmokers or smokers with COPD
|
| Organism |
Homo sapiens |
| Characteristics |
department of genetic medicine id: DGM-00167
smoking status: S
copd status: yes
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1-2 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
| Scan protocol |
GeneChips were scanned using the GeneChip Scanner 3000 7G.
|
| Description |
n/a
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
|
| |
|
| Submission date |
Jun 03, 2010 |
| Last update date |
Aug 24, 2012 |
| Contact name |
Yael Strulovici-Barel |
| E-mail(s) |
yas2003@med.cornell.edu
|
| Organization name |
Weill Cornell Medical College
|
| Department |
Department of Genetic Medicine
|
| Lab |
Crystal
|
| Street address |
1300 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (6)
|
| GSE11784 |
Biologic Phenotyping of the Human Small Airway Epithelial Response to Cigarette Smoking |
| GSE22047 |
Modulation of Cystatin A Expression in Human Airway Epithelium Related to Genotype, Smoking COPD and Lung Cancer |
| GSE30063 |
Epithelial Expression of Toll-like Receptor 5 is Modulated in Healthy Smokers and Smokers with Chronic Obstructive Lung Disease |
| GSE32030 |
Empirical Bayes Conditional Independence Graphs for Dense Regulatory Network Recovery |
| GSE40364 |
eQTL analysis of many thousands of expressed genes while simultaneously controlling for hidden factors |
| GSE64614 |
Distal-to-Proximal Re-patterning of Small Airway Epithelium in Smoking-associated Chronic Obstructive Pulmonary Disease |
|
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