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Sample GSM547632 Query DataSets for GSM547632
Status Public on Sep 06, 2010
Title Hsa embryos 22 wga
Sample type RNA
 
Source name embryonic human pancreas
Organism Homo sapiens
Characteristics gestational age: 22 wk
tissue: embryonic pancreas
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the miRVana microRNA isolation kit (Ambion).
Label FAM
Label protocol standard Taqman assay
 
Hybridization protocol not applicable
Scan protocol not applicable
Description The embryonic human pancreas were embeded in 10% volume of RNAlater solution (Ambion).
Data processing Data was processed using the softwares SDS 2.3 and RQ manager 1.2 from Applied Biosystems.
dCt for delta Ct, defined by the formula (Ct of the specific miRNA-Ct of the endogenous control RNU48) for each sample. RQ for relative quantification, defined by the formula 2^-dCt . Small nuclear RNA (RNU48) was used as endogenous control.
 
Submission date May 27, 2010
Last update date Sep 02, 2010
Contact name Ricardo Pastori
E-mail(s) RPastori@med.miami.edu
Phone 305-243-5349
Organization name University of Miami
Department Diabetes Research Institute
Street address 1450 NW 10 Ave.
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL9460
Series (1)
GSE22026 MicroRNA profiling of human pancreas development.

Data table header descriptions
ID_REF
VALUE dCt
RQ

Data table
ID_REF VALUE RQ
hsa-let-7a-4373169 4.116121 0.057666449
hsa-let-7b-4373168 3.115888 0.115351526
hsa-let-7c-4373167 3.116254 0.115322266
hsa-let-7d-4373166 7.128662 0.007145918
hsa-let-7e-4373165 7.146864 0.007056326
hsa-let-7f-4373164 4.260835 0.052162687
hsa-let-7g-4373163 3.13204 0.114067286
hsa-miR-1-4373161 6.888372 0.008440973
hsa-miR-100-4373160 1.137849 0.454435674
hsa-miR-101-4373159 6.123048 0.014347558
hsa-miR-103-4373158 4.140144 0.056714168
hsa-miR-105-4373157 null null
hsa-miR-106b-4373155 3.135833 0.113767785
hsa-miR-107-4373154 9.143169 0.001768606
hsa-miR-10a-4373153 4.140329 0.056706896
hsa-miR-10b-4373152 5.13499 0.02845857
hsa-miR-122a-4373151 null null
hsa-miR-124a-4373150 9.119112 0.001798344
hsa-miR-125a-4373149 2.066732 0.238699095
hsa-miR-125b-4373148 0.127832 0.915203833

Total number of rows: 365

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM547632.txt.gz 5.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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