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Sample GSM547629 Query DataSets for GSM547629
Status Public on Sep 06, 2010
Title Hsa embryos 14 wga N3
Sample type RNA
 
Source name embryonic human pancreas
Organism Homo sapiens
Characteristics gestational age: 14 wk
tissue: embryonic pancreas
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the miRVana microRNA isolation kit (Ambion).
Label FAM
Label protocol standard Taqman assay
 
Hybridization protocol not applicable
Scan protocol not applicable
Description The embryonic human pancreas were embeded in 10% volume of RNAlater solution (Ambion).
Data processing Data was processed using the softwares SDS 2.3 and RQ manager 1.2 from Applied Biosystems.
dCt for delta Ct, defined by the formula (Ct of the specific miRNA-Ct of the endogenous control RNU48) for each sample. RQ for relative quantification, defined by the formula 2^-dCt . Small nuclear RNA (RNU48) was used as endogenous control.
 
Submission date May 27, 2010
Last update date Sep 02, 2010
Contact name Ricardo Pastori
E-mail(s) RPastori@med.miami.edu
Phone 305-243-5349
Organization name University of Miami
Department Diabetes Research Institute
Street address 1450 NW 10 Ave.
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL9460
Series (1)
GSE22026 MicroRNA profiling of human pancreas development.

Data table header descriptions
ID_REF
VALUE dCt
RQ

Data table
ID_REF VALUE RQ
hsa-let-7a-4373169 7.056642 0.007511689
hsa-let-7b-4373168 7.378636 0.006009076
hsa-let-7c-4373167 6.399818 0.011842989
hsa-let-7d-4373166 8.383592 0.002994235
hsa-let-7e-4373165 8.331813 0.003103651
hsa-let-7f-4373164 6.54326 0.010722127
hsa-let-7g-4373163 5.392935 0.023799251
hsa-miR-1-4373161 12.398415 0.000185227
hsa-miR-100-4373160 3.385421 0.095694114
hsa-miR-101-4373159 8.404931 0.002950273
hsa-miR-103-4373158 5.382327 0.02397489
hsa-miR-105-4373157 null null
hsa-miR-106b-4373155 3.371755 0.096604888
hsa-miR-107-4373154 8.366708 0.003029482
hsa-miR-10a-4373153 5.933833 0.016358247
hsa-miR-10b-4373152 7.370544 0.006042876
hsa-miR-122a-4373151 null null
hsa-miR-124a-4373150 null null
hsa-miR-125a-4373149 2.230132 0.213138482
hsa-miR-125b-4373148 2.383697 0.191617071

Total number of rows: 365

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM547629.txt.gz 5.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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