|
Status |
Public on Oct 18, 2021 |
Title |
Sample102.Naked mole rat.203877620041_R06C01 |
Sample type |
genomic |
|
|
Source name |
Skin
|
Organism |
Heterocephalus glaber |
Characteristics |
species: Naked mole rat tissue/cell type: Skin age: 7.156164384 confidenceinageestimate: 100 canbeusedforagingstudies: yes Sex: Male queen: NA
|
Treatment protocol |
Standard Illumina Protocol
|
Growth protocol |
DNA extracted from tissues
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
genomic DNA methylation from Naked mole rat Skin
|
Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
|
|
Submission date |
May 20, 2021 |
Last update date |
Oct 18, 2021 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL28271 |
Series (1) |
GSE174777 |
Methylation studies in naked mole rat. Part 1 |
|