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Sample GSM53096 Query DataSets for GSM53096
Status Public on Jul 01, 2005
Title Breast - 2322
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.2
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 28
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Jun 30, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2022.2 P 0.000753
AFFX-BioB-M_at 3027.4 P 5.2e-005
AFFX-BioB-3_at 2094.7 P 0.000225
AFFX-BioC-5_at 5857.6 P 4.4e-005
AFFX-BioC-3_at 6628.9 P 4.4e-005
AFFX-BioDn-5_at 13638.5 P 4.4e-005
AFFX-BioDn-3_at 18781.2 P 4.4e-005
AFFX-CreX-5_at 60206.1 P 4.4e-005
AFFX-CreX-3_at 67811.7 P 4.4e-005
AFFX-DapX-5_at 369.2 P 0.000146
AFFX-DapX-M_at 829.1 P 0.002023
AFFX-DapX-3_at 1720.3 P 0.000127
AFFX-LysX-5_at 64.1 A 0.262827
AFFX-LysX-M_at 203.6 A 0.195266
AFFX-LysX-3_at 367.2 P 0.000195
AFFX-PheX-5_at 111.7 A 0.147939
AFFX-PheX-M_at 94.2 A 0.227636
AFFX-PheX-3_at 498.2 P 0.00844
AFFX-ThrX-5_at 103.2 A 0.327079
AFFX-ThrX-M_at 164.2 P 0.021902

Total number of rows: 54675

Table truncated, full table size 1455 Kbytes.




Supplementary file Size Download File type/resource
GSM53096.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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