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Sample GSM53059 Query DataSets for GSM53059
Status Public on Jul 01, 2005
Title Breast - 1290
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 20
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Jun 30, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1129.4 P 0.000754
AFFX-BioB-M_at 1649.6 P 4.4e-005
AFFX-BioB-3_at 981.3 P 0.000581
AFFX-BioC-5_at 3503.8 P 4.4e-005
AFFX-BioC-3_at 4325.8 P 4.4e-005
AFFX-BioDn-5_at 8296.7 P 4.4e-005
AFFX-BioDn-3_at 14026 P 4.4e-005
AFFX-CreX-5_at 36694.9 P 5.2e-005
AFFX-CreX-3_at 43650.9 P 4.4e-005
AFFX-DapX-5_at 2429.1 P 6e-005
AFFX-DapX-M_at 4588.2 P 0.000169
AFFX-DapX-3_at 6938.8 P 5.2e-005
AFFX-LysX-5_at 293.8 P 0.000258
AFFX-LysX-M_at 576.4 P 0.000754
AFFX-LysX-3_at 1369.8 P 4.4e-005
AFFX-PheX-5_at 360.3 P 5.2e-005
AFFX-PheX-M_at 576.7 P 0.000195
AFFX-PheX-3_at 797.9 P 0.000127
AFFX-ThrX-5_at 584.2 P 8.1e-005
AFFX-ThrX-M_at 888.1 P 4.4e-005

Total number of rows: 54675

Table truncated, full table size 1453 Kbytes.




Supplementary file Size Download File type/resource
GSM53059.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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