|
| Status |
Public on Mar 30, 2021 |
| Title |
ATAC-seq from ovary (ENCLB655WGV) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens female adult (61 years) ovary tissue, preserved by cryopreservation
|
| Organism |
Homo sapiens |
| Characteristics |
tissue_type: ovary
biomaterial_type: tissue
biosample encode accession: ENCBS364GNL (SAMN18513251)
Sex: female
health state: DM: no; HTN: no; CAD: no; lungs with moderate emphysema
dev stage: adult
age: 61 year
donor_id: ENCDO186XRB
lab: Michael Snyder, Stanford
source: Yiing Lin, MD, PhD
link: ENCBS364GNL at ENCODE; https://www.encodeproject.org/ENCBS364GNL/
link: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/ce0b7d60-8043-4fd8-9a2e-fd6df4127c76/@@download/attachment/ENCODE4_ATAC_TissueProcessing_v1.pdf
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR392UJM/
***************
biological replicate number: 1
technical replicate number: 2
description: ATAC-seq on human ovary
experiment encode accession: ENCSR392UJM
assay title: ATAC-seq
assembly: GRCh38
encode release date: 2020-09-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB655WGV
fragmentation methods: chemical (Tn5 transposase)
size range: 200-7000
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 27, 2021 |
| Last update date |
Apr 01, 2021 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
|
| Relations |
| BioSample |
SAMN18513251 |
| SRA |
SRX10478300 |
