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Sample GSM509783 Query DataSets for GSM509783
Status Public on Jun 30, 2011
Title Vac__baseline_rep17
Sample type RNA
 
Source name Vaccine_baseline_rep17
Organism Homo sapiens
Characteristics tissue: Paxgene Whole Blood RNA Samples
Treatment protocol Whole blood samples collected using PAXgene RNA tubes and stored at -20 degrees Celcius until processing
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene RNA
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4950679034_I
Data processing Data was normalised using cubic spline algorithm in Illumina BeadStudio V2.0
 
Submission date Feb 16, 2010
Last update date Jun 30, 2011
Contact name Grant Parnell
E-mail(s) gpar3109@uni.sydney.edu.au
Organization name University of Sydney
Department Nepean Clinical School
Lab Intensive Care
Street address Nepean Hospital
City Kingswood
State/province NSW
ZIP/Postal code 2747
Country Australia
 
Platform ID GPL6947
Series (1)
GSE20346 Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients

Data table header descriptions
ID_REF
VALUE cubic spline normalised intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -9.681642 0.8972332
ILMN_1736007 21.62543 0.0078331
ILMN_2383229 2.341328 0.4403862
ILMN_1671474 18.16837 0.008853789
ILMN_1772582 8.18397 0.1884058
ILMN_1735698 30.77683 0.0171278
ILMN_1653355 22.01711 0.1836663
ILMN_1787689 0.762407 0.4239928
ILMN_1745607 -7.208407 0.8168643
ILMN_2136495 -4.861746 0.7220026
ILMN_1668111 2.797253 0.3083039
ILMN_1735045 -1.099953 0.544137
ILMN_1680754 1.230418 0.4387352
ILMN_2375184 2.420507 0.3662192
ILMN_1755321 12.62147 0.113307
ILMN_1698554 18.03682 0.06192358
ILMN_1814092 22.90033 0.03820817
ILMN_1760414 -11.92132 0.9407114
ILMN_2061446 55.11959 0.02780946
ILMN_1752884 14.6915 0.09222662

Total number of rows: 37804

Table truncated, full table size 1169 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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