|
| Status |
Public on Jan 18, 2021 |
| Title |
RNA_BrainE15_Baf53a_Het_3 |
| Sample type |
SRA |
| |
|
| Source name |
Mouse forebrains E15.5
|
| Organism |
Mus musculus |
| Characteristics |
tissue: forebrain E15.5
genotype: Het
|
| Growth protocol |
Forebrains were disected from E15.5 embryos and dissociated into a single cell suspension.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA
Libraries were prepared using the SMARTer kit (Takara Bio # 634874), which produces stranded libraries from rRNA depleted total RNA.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Reads were trimmed with cutadapt 1.16 using -u 3 option. Transcripts were quantified using Kallisto against UCSC mm10 reference.
Genome_build: Genome_build: mm10
Supplementary_files_format_and_content: Kallisto abundance estimates
|
| |
|
| Submission date |
Jan 17, 2021 |
| Last update date |
Jan 19, 2021 |
| Contact name |
Simon Braun |
| E-mail(s) |
simon.braun@unige.ch
|
| Organization name |
University of Geneva
|
| Street address |
rue Michel Servet 1
|
| City |
Geneva |
| ZIP/Postal code |
1211 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE164990 |
BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex [RNA-seq] |
| GSE164991 |
BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex |
|
| Relations |
| BioSample |
SAMN17367780 |
| SRA |
SRX9863655 |
