NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM496030 Query DataSets for GSM496030
Status Public on Jan 03, 2013
Title Expression data of CC_FL_20
Sample type RNA
 
Source name Colorecal Cancer, FL_P_20
Organism Homo sapiens
Characteristics tissue: Colorecal Cancer
treatment response: FL_Responder
Extracted molecule total RNA
Extraction protocol Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description FL_Responder
Data processing Affymetrix Microarray Suite version 5.0, PerChip/PerGene normalization
 
Submission date Jan 12, 2010
Last update date Jan 03, 2013
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE19860 Prediction of response to FOLFOX

Data table header descriptions
ID_REF
VALUE PerChip /PerGene normalized signal intensity (log)
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF VALUE ABS_CALL
1552256_a_at 0.74768966 P
1552257_a_at 0.35190836 P
1552258_at 0.002311655 A
1552261_at 0.1458372 A
1552263_at 0.45797363 P
1552264_a_at 0.522783 P
1552266_at -0.060446676 A
1552269_at -0.09688502 A
1552271_at 0.30111524 A
1552272_a_at 0.21597356 P
1552274_at -0.079599 P
1552275_s_at 0.068826154 P
1552276_a_at -1.351024 A
1552277_a_at 0.5243704 P
1552278_a_at 1.22391 P
1552279_a_at 0.4414992 P
1552280_at -1.4602121 A
1552281_at 0.23582044 P
1552283_s_at -0.68301785 P
1552286_at 0.27975604 P

Total number of rows: 54675

Table truncated, full table size 1284 Kbytes.




Supplementary file Size Download File type/resource
GSM496030.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap