|
| Status |
Public on Jan 27, 2021 |
| Title |
Meninges Old 2 |
| Sample type |
SRA |
| |
|
| Source name |
Dural Meninges
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6J
age: 24months
gender: male
tissue: Dural Meninges
|
| Extracted molecule |
total RNA |
| Extraction protocol |
10x Genomics Chromium single-cell preparation
NGS Illumina Next Seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
RNA was isolated from the brains of 5 mice.
|
| Data processing |
Illumina bcl2fastq software used for basecalling
UMI count matrices generated using the Cellranger count pipeline 4.0.0. The output from the cellranger count pipeline for each sample has been uploaded as a folder containing count, barcode, and gene matrices.
Genome_build: mm10
Supplementary_files_format_and_content: Compressed folders containing the raw UMI count matrices for each sample, as well as matrices with gene symbols and barcodes.
|
| |
|
| Submission date |
Nov 11, 2020 |
| Last update date |
Jan 27, 2021 |
| Contact name |
Jonathan Kipnis |
| Organization name |
Washington University in Saint Louis
|
| Department |
Pathology and Immunology
|
| Lab |
Kipnis Lab
|
| Street address |
4515 McKinley Ave
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE144175 |
Cellular and molecular characterization of the dural sinuses as a neuroimmune interface |
| GSE161290 |
Cellular and molecular characterization of the dural sinuses as a neuroimmune interface [whole dura] |
|
| Relations |
| BioSample |
SAMN16770784 |
| SRA |
SRX9486501 |
