|
| Status |
Public on Oct 19, 2020 |
| Title |
K14_hyal1_colon |
| Sample type |
SRA |
| |
|
| Source name |
K14/hyal1
|
| Organism |
Mus musculus |
| Characteristics |
strain background: C57BL/6J
genotype/variation: K14/hyal1
tissue/cell type: colon lamina propria
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total cellular RNA was extracted using the PureLink RNA Mini Kit (Life Technologies Corporation, Grand Island, NY)
Libraries were constructed using TruSeq Stranded mRNA Library Prep Kits (Illumina) and run on a HiSeq 2500 instrument (Illumina).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
K14_hyal1_colon_S2_L006
|
| Data processing |
Raw data was analyzed using Partek Flow and Partek Genomics Suite software to determine transcript abundance and differentially expressed genes between samples
Genome_build: mm10
Supplementary_files_format_and_content: transcript abundance and differentially expressed genes between samples
|
| |
|
| Submission date |
Oct 04, 2020 |
| Last update date |
Oct 19, 2020 |
| Contact name |
Jason Samuel Seidman |
| E-mail(s) |
jseidman@ucsd.edu
|
| Phone |
6507763250
|
| Organization name |
University of California San Diego
|
| Department |
Cellular and Molecular Medicine
|
| Lab |
Christopher K Glass
|
| Street address |
9500 Gilman Drive, Mail code 0651
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platform ID |
GPL17021 |
| Series (2) |
| GSE158989 |
Interepithelial inflammatory crosstalk mediated by stromal fibroblast communication through hyaluronan [dataset 2] |
| GSE159509 |
Interepithelial inflammatory crosstalk mediated by stromal fibroblast communication through hyaluronan |
|
| Relations |
| BioSample |
SAMN16362800 |
| SRA |
SRX9240089 |
