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Status
Public on Apr 09, 2005
Title
Medium HIV-1 infection of human PBMCs in vitro, with N. gonorrheae (1)
Sample type
RNA
Source name
Peripheral blood mononuclear cells (PBMCs)
Organism
Homo sapiens Extracted molecule
total RNA
Description
We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.
Submission date
Apr 07, 2005
Last update date
May 27, 2005
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571 Series (1)
GSE2505 HIV-1 burden influences host response to co-infection with Neisseria gonorrhoeae in vitro
Data table header descriptions ID_REF
VALUE Scaled intensity values
DETECTION P-VALUE Quality of measurement
ABS_CALL Present, absent or marginal call
U_S_Ave Average of unscaled, smoothed data from the medium HIV-1 pair
Data table ID_REF VALUE DETECTION P-VALUE ABS_CALL U_S_Ave 1007_s_at
103.8
0.006532
P
42.65
1053_at
428.7
0.000388
P
127.8
117_at
60.3
0.07383
A
33.65
121_at
265.9
0.007543
P
71.15
1255_g_at
5.1
0.837105
A
23.4
1294_at
1021.4
0.000219
P
180.05
1316_at
64.7
0.035163
P
30.35
1320_at
21.7
0.479377
A
22.65
1405_i_at
16797.2
0.000491
P
3290.85
1431_at
11.6
0.250724
A
21.5
1438_at
8.9
0.765443
A
22.8
1487_at
521.5
0.02786
P
121.2
1494_f_at
72.8
0.11716
A
30.7
1598_g_at
177.8
0.11716
A
51.7
160020_at
89.8
0.031336
P
45.45
1729_at
974.5
0.000322
P
209.8
177_at
33.2
0.162935
A
23.7
1773_at
30.3
0.32083
A
28.85
179_at
143.2
0.5
A
56.85
1861_at
217.5
0.001354
P
63.2
22277 712 Kbytes .Supplementary data files not provided
