|
| Status |
Public on Oct 20, 2020 |
| Title |
WG0283681-DNA_F05_CS401843 |
| Sample type |
genomic |
| |
|
| Source name |
ND, STG
|
| Organism |
Homo sapiens |
| Characteristics |
sample_bcd_barcode: WG0006908-BCD_D02
sample_well: D02
donorid: 4291
gender: Male
age at death: 74
pmi: 3.25
cs.tube.number: CS401843
brain.region: STG
dx: ND
cerad.np: not AD
braak.score: I
nia.r: criteria not met
sva1: -0.0587763789053417
sva2: 0.0129052335799287
sva3: -0.0754029289343096
sva4: -0.104429583262883
sva5: 0.0887113941280225
sva6: 0.0439532931982129
sva7: -0.0649277235417336
sva8: -0.0175958541978409
sva9: -0.163406990609605
sva10: 0.0189519319014454
sva11: -0.0179584173804683
sva12: -0.0581054084595511
sva13: -0.0454234574362372
sva14: 0.0987005794284227
sva15: 0.00462401202366336
sva16: 0.0270657838775725
sva17: 0.0218150319272537
sva18: -0.0164026596971806
sva19: -0.000687389099869196
array: R04C01
slide: 201502840051
basename: JnJ_Li_EPIC_2017.04/IDATs/201502840051/201502840051_R04C01
neun_neg: 0.61326231862826
neun_pos: 0.379440056706511
total_called_fraction: 0.9976945
beta_dhigh_peak: 2.5207918
beta_dlow_peak: 2.5220067
beta_dhigh_beta_dlow_ratio: 0.9995183
beta_dhigh_xint: 0.8425745
beta_dlow_xint: 0.0378603
bisulfite_conversion_i_red_high_mean: 23751.33333
bisulfite_conversion_i_grn_high_mean: 9210
bisulfite_conversion_ii_red_high_mean: 18974.25
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
AllPrep DNA/RNA/miRNA Universal Kit (QIAGEN Inc., Germantown, MD, USA)
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Not provided
|
| |
|
| Hybridization protocol |
Infinium® HD Assay Methylation Protocol
|
| Scan protocol |
Infinium® HD Assay Methylation Protocol
|
| Description |
201502840051_R04C01
|
| Data processing |
Illumina® GenomeStudio
normalized (dasen) Average Beta
Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Aug 27, 2020 |
| Last update date |
Oct 20, 2020 |
| Contact name |
Qingqin S Li |
| Organization name |
Janssen R&D, LLC
|
| Street address |
1125 Trenton-Harbourton Road
|
| City |
Titusville |
| State/province |
NJ |
| ZIP/Postal code |
08560 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE156984 |
Epigenome wide association study of post-mortem Alzheimer’s Disease samples |
|
