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GEO accession:
Sample GSM4705039
Query DataSets for GSM4705039
Status
Public on Jul 31, 2020
Title
HeLa_water
Sample type
genomic
Source name
HeLa
Organism
Homo sapiens
Characteristics
cell line: HeLa
compound: water
Growth protocol
37ºC, 5% CO2, McCoy's 5A (HCT116) or DMEM (HeLa) media with 10% FBS and no antibiotics
Extracted molecule
genomic DNA
Extraction protocol
Qiagen Dneasy kit
Label
Cy3, Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to the Illumina Infinium MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using iScan using standard recommended Illumina scanner setting
Data processing
openSesame from SeSAMe R package
Submission date
Jul 31, 2020
Last update date
Jul 31, 2020
Contact name
Scott Rothbart
E-mail(s)
scott.rothbart@vai.org
Organization name
Van Andel Research Institute
Department
Center for Epigenetics
Lab
Rothbart Lab
Street address
333 Bostwick Ave NE
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Platform ID
GPL21145
Series (1)
GSE148086
DNA methylation analysis of HCT116 after disruption of methyllysine reading and writing.
Data table header descriptions
ID_REF
VALUE
Beta value
Data table
ID_REF
VALUE
cg00000029
0.84818686344576
cg00000103
cg00000109
0.906395570632106
cg00000155
0.942278835915161
cg00000158
0.945978938522001
cg00000165
0.451272067440762
cg00000221
0.900244821294952
cg00000236
0.926638988936139
cg00000289
cg00000292
0.92604983758042
cg00000321
0.886573637502453
cg00000363
0.534105522317589
cg00000540
0.404801395672612
cg00000579
0.441414096845645
cg00000596
0.0650651778292744
cg00000622
0.02656195850734
cg00000658
0.790427741360009
cg00000714
0.130798116145652
cg00000721
0.912174063023812
cg00000734
0.0978585694955069
Total number of rows:
865918
Table truncated, full table size
22127 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM4705039_HeLa_water_Grn.idat.gz
6.9 Mb
(ftp)
(http)
IDAT
GSM4705039_HeLa_water_Red.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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