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Sample GSM465830 Query DataSets for GSM465830
Status Public on Jan 13, 2010
Title DFCI #129 5 ng rep2
Sample type RNA
 
Source name Human ovarian tumor
Organism Homo sapiens
Characteristics gender: female
tissue: ovarian tumor
cell type: DFCI 129
amount: 5 ng
Treatment protocol Formalin-fixed, paraffin-embedded.
Extracted molecule total RNA
Extraction protocol RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
Label Cy3
Label protocol Standard Illumina labelling protocol.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1.

Non-normalized data is available in the 'GSE18769_nonorm_nobkgd.txt' file, which is linked to the Series GSE18769 record as a supplementary file.
 
Submission date Oct 27, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
GSE18769 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Dilutions

Data table header descriptions
ID_REF
VALUE quantile normalized
DFCI #129 5 ng rep2.Avg_NBEADS
DFCI #129 5 ng rep2.BEAD_STDERR
DFCI #129 5 ng rep2.Detection Pval

Data table
ID_REF VALUE DFCI #129 5 ng rep2.Avg_NBEADS DFCI #129 5 ng rep2.BEAD_STDERR DFCI #129 5 ng rep2.Detection Pval
ILMN_1762337 2569.259 47 99.36472 0
ILMN_2055271 1902.364 40 89.51845 0
ILMN_2383229 97.39725 26 7.771574 0.5436893
ILMN_1806310 165.1637 38 5.787085 0.2718447
ILMN_1779670 1844.071 58 52.2679 0
ILMN_2321282 292.5142 47 6.494946 0.05825243
ILMN_1772582 2395.871 45 98.57237 0
ILMN_1717783 614.7083 45 33.86919 0.003236246
ILMN_1814316 4703.93 34 246.6897 0
ILMN_2359168 5059.007 39 150.4221 0
ILMN_1731507 79.36937 29 6.352418 0.6925566
ILMN_1787689 232.8087 38 5.600108 0.1165049
ILMN_1745607 5408.454 42 257.3282 0
ILMN_2136495 73.85821 31 4.895106 0.7443365
ILMN_1668111 64.80885 39 7.37396 0.8414239
ILMN_2295559 69.75579 44 5.605409 0.7961165
ILMN_1735045 616.9221 32 35.99041 0.003236246
ILMN_1680754 240.4071 41 8.154202 0.1067961
ILMN_2375184 149.5725 36 8.906564 0.3139158
ILMN_1659452 191.812 51 6.219956 0.1941748

Total number of rows: 24526

Table truncated, full table size 936 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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