 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 66/33 rep3 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 66% 121 / 33% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol.
|
| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 3
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
|
| |
|
| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 66/33 rep3.Avg_NBEADS |
|
| DFCI #121/123 66/33 rep3.BEAD_STDERR |
|
| DFCI #121/123 66/33 rep3.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 66/33 rep3.Avg_NBEADS |
DFCI #121/123 66/33 rep3.BEAD_STDERR |
DFCI #121/123 66/33 rep3.Detection Pval |
| ILMN_1762337 |
3129.2 |
45 |
143.338 |
0 |
| ILMN_2055271 |
557.8732 |
30 |
39.57345 |
0 |
| ILMN_2383229 |
178.409 |
36 |
12.53322 |
0.03236246 |
| ILMN_1806310 |
94.67593 |
34 |
7.818414 |
0.08414239 |
| ILMN_1779670 |
297.2742 |
49 |
14.71712 |
0.009708738 |
| ILMN_2321282 |
105.603 |
40 |
8.230126 |
0.0776699 |
| ILMN_1772582 |
2326.279 |
43 |
70.0613 |
0 |
| ILMN_1717783 |
697.3497 |
35 |
52.29952 |
0 |
| ILMN_1814316 |
5590.409 |
37 |
166.8524 |
0 |
| ILMN_2359168 |
5280.02 |
43 |
180.1151 |
0 |
| ILMN_1731507 |
71.42312 |
36 |
7.755647 |
0.2135922 |
| ILMN_1787689 |
71.79895 |
39 |
7.098279 |
0.210356 |
| ILMN_1745607 |
6563.429 |
28 |
368.0256 |
0 |
| ILMN_2136495 |
112.4165 |
49 |
8.002423 |
0.07443365 |
| ILMN_1668111 |
479.2299 |
30 |
24.89264 |
0.003236246 |
| ILMN_2295559 |
65.12171 |
36 |
6.56562 |
0.2912621 |
| ILMN_1735045 |
614.8763 |
50 |
31.55211 |
0 |
| ILMN_1680754 |
88.01707 |
34 |
8.627935 |
0.1035599 |
| ILMN_2375184 |
150.2512 |
22 |
12.36592 |
0.0420712 |
| ILMN_1659452 |
164.605 |
36 |
10.34906 |
0.03883495 |
Total number of rows: 24526
Table truncated, full table size 933 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
|
|
|
|
 |
