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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 33/66 rep2 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 2
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 33/66 rep2.Avg_NBEADS |
|
| DFCI #121/123 33/66 rep2.BEAD_STDERR |
|
| DFCI #121/123 33/66 rep2.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 33/66 rep2.Avg_NBEADS |
DFCI #121/123 33/66 rep2.BEAD_STDERR |
DFCI #121/123 33/66 rep2.Detection Pval |
| ILMN_1762337 |
5805.107 |
43 |
148.0493 |
0 |
| ILMN_2055271 |
705.204 |
41 |
12.09013 |
0.003236246 |
| ILMN_2383229 |
72.73347 |
44 |
3.110572 |
0.2977346 |
| ILMN_1806310 |
61.68259 |
52 |
3.440691 |
0.4886732 |
| ILMN_1779670 |
275.8075 |
48 |
6.569322 |
0.03236246 |
| ILMN_2321282 |
124.989 |
33 |
7.661153 |
0.0776699 |
| ILMN_1772582 |
950.6705 |
44 |
20.2066 |
0.003236246 |
| ILMN_1717783 |
259.9975 |
39 |
7.626328 |
0.03883495 |
| ILMN_1814316 |
6300.624 |
39 |
128.2601 |
0 |
| ILMN_2359168 |
6058.981 |
36 |
127.9182 |
0 |
| ILMN_1731507 |
297.5505 |
28 |
13.11292 |
0.02912621 |
| ILMN_1787689 |
108.0454 |
38 |
7.190464 |
0.1035599 |
| ILMN_1745607 |
10675.69 |
48 |
303.6307 |
0 |
| ILMN_2136495 |
304.4653 |
31 |
6.059889 |
0.02912621 |
| ILMN_1668111 |
151.858 |
50 |
4.632149 |
0.05825243 |
| ILMN_2295559 |
59.56971 |
31 |
3.948249 |
0.5242718 |
| ILMN_1735045 |
981.7109 |
40 |
20.97729 |
0.003236246 |
| ILMN_1680754 |
85.12979 |
41 |
5.425298 |
0.1877023 |
| ILMN_2375184 |
220.6191 |
43 |
7.388865 |
0.04530744 |
| ILMN_1659452 |
242.8758 |
45 |
6.474554 |
0.03883495 |
Total number of rows: 24526
Table truncated, full table size 955 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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