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| Status |
Public on Jan 13, 2010 |
| Title |
DFCI #121/123 33/66 rep1 |
| Sample type |
RNA |
| |
|
| Source name |
Human ovarian tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: ovarian tumor
cell types: DFCI 121, DFCI 123
ratio mix: 33% 121 / 66% 123
|
| Treatment protocol |
Formalin-fixed, paraffin-embedded.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Standard Illumina labelling protocol.
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| |
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| Hybridization protocol |
Standard Illumina hybridization protocol.
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| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
replicate 1
|
| Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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| |
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| Submission date |
Oct 27, 2009 |
| Last update date |
Jan 13, 2010 |
| Contact name |
Craig April |
| E-mail(s) |
capril@illumina.com
|
| Organization name |
Illumina, Inc.
|
| Street address |
9885 Towne Centre Drive
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121-1975 |
| Country |
USA |
| |
|
| Platform ID |
GPL6883 |
| Series (2) |
| GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
| GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile normalized |
| DFCI #121/123 33/66 rep1.Avg_NBEADS |
|
| DFCI #121/123 33/66 rep1.BEAD_STDERR |
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| DFCI #121/123 33/66 rep1.Detection Pval |
|
| Data table |
| ID_REF |
VALUE |
DFCI #121/123 33/66 rep1.Avg_NBEADS |
DFCI #121/123 33/66 rep1.BEAD_STDERR |
DFCI #121/123 33/66 rep1.Detection Pval |
| ILMN_1762337 |
5062.06 |
48 |
180.285 |
0 |
| ILMN_2055271 |
514.7094 |
35 |
25.28634 |
0.003236246 |
| ILMN_2383229 |
140.7896 |
39 |
7.044979 |
0.04854369 |
| ILMN_1806310 |
55.81695 |
49 |
3.543862 |
0.5113268 |
| ILMN_1779670 |
173.7562 |
35 |
11.61061 |
0.0420712 |
| ILMN_2321282 |
153.9334 |
37 |
7.703552 |
0.0420712 |
| ILMN_1772582 |
1379.293 |
37 |
37.86215 |
0 |
| ILMN_1717783 |
366.5236 |
28 |
22.08918 |
0.009708738 |
| ILMN_1814316 |
5413.677 |
38 |
151.1431 |
0 |
| ILMN_2359168 |
4950.211 |
36 |
176.4575 |
0 |
| ILMN_1731507 |
148.7336 |
40 |
10.37061 |
0.04854369 |
| ILMN_1787689 |
76.96695 |
35 |
7.064389 |
0.1682848 |
| ILMN_1745607 |
7721.688 |
45 |
335.7263 |
0 |
| ILMN_2136495 |
263.9821 |
37 |
11.88995 |
0.01618123 |
| ILMN_1668111 |
207.8742 |
33 |
13.06856 |
0.03236246 |
| ILMN_2295559 |
43.43915 |
50 |
3.864724 |
0.8705502 |
| ILMN_1735045 |
555.7759 |
46 |
29.39763 |
0.003236246 |
| ILMN_1680754 |
58.40167 |
18 |
9.4651 |
0.4368932 |
| ILMN_2375184 |
73.35251 |
41 |
6.459122 |
0.1909385 |
| ILMN_1659452 |
89.4184 |
51 |
5.088359 |
0.1100324 |
Total number of rows: 24526
Table truncated, full table size 943 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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