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Status |
Public on Jan 13, 2010 |
Title |
DFCI #121/123 50/50 rep1 |
Sample type |
RNA |
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Source name |
Human ovarian tumor
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Organism |
Homo sapiens |
Characteristics |
gender: female tissue: ovarian tumor cell types: DFCI 121, DFCI 123 ratio mix: 50% 121 / 50% 123
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Treatment protocol |
Formalin-fixed, paraffin-embedded.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen).
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Label |
Cy3
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Label protocol |
Standard Illumina labelling protocol.
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Hybridization protocol |
Standard Illumina hybridization protocol.
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Scan protocol |
Standard Illumina scanning protocol.
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Description |
replicate 1
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Data processing |
Raw data was analyzed using GenomeStudio v1.1.
Non-normalized data is available in the 'GSE18767_nonorm_nobkgd.txt' file, which is linked to the Series GSE18767 record as a supplementary file.
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Submission date |
Oct 27, 2009 |
Last update date |
Jan 13, 2010 |
Contact name |
Craig April |
E-mail(s) |
capril@illumina.com
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Organization name |
Illumina, Inc.
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Street address |
9885 Towne Centre Drive
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121-1975 |
Country |
USA |
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Platform ID |
GPL6883 |
Series (2) |
GSE17599 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples |
GSE18767 |
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tumor Tissue Samples: Ratios |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile normalized |
DFCI #121/123 50/50 rep1.Avg_NBEADS |
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DFCI #121/123 50/50 rep1.BEAD_STDERR |
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DFCI #121/123 50/50 rep1.Detection Pval |
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Data table |
ID_REF |
VALUE |
DFCI #121/123 50/50 rep1.Avg_NBEADS |
DFCI #121/123 50/50 rep1.BEAD_STDERR |
DFCI #121/123 50/50 rep1.Detection Pval |
ILMN_1762337 |
3812.521 |
46 |
169.6023 |
0 |
ILMN_2055271 |
390.7068 |
31 |
23.47322 |
0.003236246 |
ILMN_2383229 |
57.60234 |
40 |
7.119696 |
0.433657 |
ILMN_1806310 |
62.07728 |
36 |
9.017398 |
0.3106796 |
ILMN_1779670 |
440.6276 |
43 |
24.93361 |
0.003236246 |
ILMN_2321282 |
111.7587 |
39 |
8.93743 |
0.05825243 |
ILMN_1772582 |
1552.062 |
43 |
88.36201 |
0 |
ILMN_1717783 |
398.8731 |
41 |
28.50402 |
0.003236246 |
ILMN_1814316 |
4772.007 |
34 |
208.5742 |
0 |
ILMN_2359168 |
5009.587 |
38 |
122.6319 |
0 |
ILMN_1731507 |
151.0558 |
38 |
8.757625 |
0.0420712 |
ILMN_1787689 |
81.82386 |
44 |
6.191095 |
0.1067961 |
ILMN_1745607 |
6243.989 |
35 |
361.0567 |
0 |
ILMN_2136495 |
217.0057 |
41 |
12.39827 |
0.01618123 |
ILMN_1668111 |
59.79659 |
35 |
6.581 |
0.3592233 |
ILMN_2295559 |
47.66941 |
38 |
5.181368 |
0.7637541 |
ILMN_1735045 |
570.2142 |
51 |
37.6422 |
0 |
ILMN_1680754 |
80.40593 |
40 |
6.072663 |
0.1100324 |
ILMN_2375184 |
107.8946 |
37 |
6.647188 |
0.06148867 |
ILMN_1659452 |
92.18882 |
53 |
9.819519 |
0.0776699 |
Total number of rows: 24526
Table truncated, full table size 934 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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