|
| Status |
Public on Apr 10, 2024 |
| Title |
Clone6_Minus [ATAC-seq] |
| Sample type |
SRA |
| |
|
| Source name |
Mouse Bone Marrow ER-Hoxb8 monocytic cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: ER-Hoxb8 cells
|
| Growth protocol |
ER-HoxB8 cells were maintained in RPMI medium supplemented with 10% FBS, penicillin/streptomycin, and SCF.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ATAC-seq samples were performed as previously described (Buenrostro et al., 2015)
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
ATAC-Seqdata in ER-Hoxb8 cells
|
| Data processing |
Illumina software used for basecalling.
Raw sequences of ATAC-seq data were mapped with a Bowtie2 mapper with a default setting to the mouse genome (mm10).
Genome_build: mm10
Supplementary_files_format_and_content: peaks
|
| |
|
| Submission date |
Apr 13, 2020 |
| Last update date |
Apr 10, 2024 |
| Contact name |
David T Scadden |
| E-mail(s) |
dscadden@mgh.harvard.edu
|
| Organization name |
MGH
|
| Department |
Center for Regenerative Medicine
|
| Street address |
185 Cambridge St
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02114 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE148549 |
Functionally distinct subset of monocytes in mouse and human blood [ATAC-Seq] |
| GSE148555 |
Functionally distinct subset of monocytes in mouse and human blood |
|
| Relations |
| BioSample |
SAMN14590980 |
| SRA |
SRX8110204 |
