|
| Status |
Public on Sep 02, 2009 |
| Title |
BC11979 |
| Sample type |
RNA |
| |
|
| Source name |
Breast cancer
|
| Organism |
Homo sapiens |
| Characteristics |
center: IPC
type: IBC
age of diagnosis (year): 38
molecular subtype: ERBB2
histology: DUC
pt: pT1
pn: pos
grade sbr: 3
erbb2 ihc status: pos
er ihc status: neg
pr ihc status: neg
p53 ihc status: --
ki67 ihc status: pos
erbb2.ht ihc status: pos
erbb2.tab ihc status: pos
erbb2p ihc status: pos
igf1r ihc status: neg
egfr ihc status: neg
top2a ihc status: pos
foxa1 ihc status: pos
mfs: 0
mfsdel (month): 56.9
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Guanidinium isothiocyanate and centrifugation over a cesium chloride gradient.
|
| Label |
biotin
|
| Label protocol |
see Affymetrix standard protocols
|
| |
|
| Hybridization protocol |
see Affymetrix standard protocols
|
| Scan protocol |
see Affymetrix standard protocols
|
| Description |
200406.02.CEL
|
| Data processing |
RMA. Controls were removed, like all genes with low and poorly measured expression as defined by an expression value inferior to 100 units in all samples. Data were then log2 transformed.
|
| |
|
| Submission date |
Sep 01, 2009 |
| Last update date |
Aug 19, 2011 |
| Contact name |
Pascal FINETTI |
| E-mail(s) |
finettip@ipc.unicancer.fnclcc.fr
|
| Phone |
(33)+4 91 22 33 04
|
| Organization name |
Institut Paoli-Calmettes
|
| Department |
Centre de cancérologie de Marseille
|
| Lab |
Molecular Oncology
|
| Street address |
232 Bd Ste Marguerite
|
| City |
Marseille |
| State/province |
BdR |
| ZIP/Postal code |
13009 |
| Country |
France |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE17907 |
Molecular profiling of ERBB2-amplified breast cancers |
|
| Relations |
| Reanalyzed by |
GSM781317 |
