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Sample GSM446 Query DataSets for GSM446
Status Public on Jul 24, 2001
Title vjr mixed control (red, channel 2) vs N2-2 T3 (green, channel 1)
Sample type RNA
 
Channel 1
Source name N2-2 T3 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name vjr mixed control (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: L4
Experimental details: synchronized wild type L4 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10991
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 287 283 349 909 561 366 348 238 384 623 .718 0 .139 1.737 70 65 .622 .908 1.607 1.101 1.178 1040 185 31 46 1771 1786 .139
2 284 278 14 393 39 373 354 242 27 269 .032 -100 1.633 20 20 .359 .524 2.786 1.908 797 137 932 945 1776 1789 .932
3 292 285 157 794 442 375 352 241 303 544 .625 0 .947 2.86 53 73 .355 .519 2.815 1.928 1.202 643 137 53 66 1771 1784 .947
4 288 283 17 400 22 391 378 259 15 274 .055 0 -.174 1.431 24 15 .773 1.128 1.294 .886 .098 636 137 952 965 1776 1789 -.174
5 292 282 50 442 90 364 352 241 62 303 .126 0 .302 1.485 26 31 .556 .811 1.8 1.233 .205 573 137 73 86 1771 1784 .302
6 283 276 14 440 70 399 370 253 48 301 .055 0 1.776 1.5 20 17 .2 .292 5 3.424 .114 687 137 972 985 1778 1791 1.776
7 858 288 427 1144 792 1082 352 241 542 783 .818 0 .345 2.003 0 0 .539 .787 1.855 1.27 1.436 719 185 89 104 1769 1784 .345
8 285 279 185 633 265 390 368 252 181 434 .406 0 -.028 1.404 62 54 .698 1.019 1.432 .981 .657 663 137 992 1005 1778 1791 -.028
9 293 287 1170 688 319 384 369 253 218 471 .617 0 -2.421 .296 80 56 3.668 5.355 .273 .187 .209 748 185 109 124 1769 1784 -2.421
10 285 275 280 461 110 376 351 240 75 316 .283 0 -1.894 .586 70 32 2.545 3.717 .393 .269 .254 546 137 1012 1025 1777 1790 -1.894
11 291 280 73 441 50 408 391 268 34 302 .164 -100 1.655 33 26 1.46 2.132 .685 .469 .217 520 137 133 146 1771 1784 -1.092
12 281 273 146 699 319 403 380 260 218 479 .613 0 .581 1.688 60 55 .458 .668 2.185 1.496 1.239 587 156 1033 1047 1779 1793 .581
13 288 284 1296 2508 2145 381 363 249 1469 1718 .947 0 .181 1.648 84 83 .604 .882 1.655 1.134 1.565 1014 198 481 497 1774 1790 .181
14 367 287 86 1941 1581 500 360 247 1083 1329 .487 0 3.654 10.787 40 56 .054 .079 18.384 12.59 4.276 1027 185 1381 1396 1778 1793 3.654
15 284 277 6589 6201 5855 366 346 237 4010 4247 .949 0 -.716 .89 88 78 1.125 1.643 .889 .609 .889 703 231 500 517 1774 1791 -.716
16 283 273 62 484 136 367 348 238 93 331 .212 0 .587 1.295 28 35 .456 .666 2.194 1.502 .35 554 137 1404 1417 1779 1792 .587
17 281 274 1427 2875 2525 372 350 240 1729 1969 .905 0 .277 1.877 74 76 .565 .825 1.769 1.212 1.571 753 231 520 537 1774 1791 .277
18 297 286 467 1028 643 402 385 264 440 704 .855 0 -.085 1.424 71 68 .726 1.06 1.377 .943 1.17 635 185 1420 1435 1778 1793 -.085
19 283 278 197 818 467 371 351 240 320 560 .671 0 .699 2.313 50 68 .422 .616 2.371 1.624 1.168 877 287 539 558 1773 1792 .699
20 304 301 4305 5348 4963 417 385 264 3399 3663 .964 0 -.341 1.137 85 81 .867 1.267 1.153 .79 1.13 540 185 1440 1455 1777 1792 -.341

Total number of rows: 13323

Table truncated, full table size 1652 Kbytes.




Supplementary data files not provided

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