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Sample GSM445 Query DataSets for GSM445
Status Public on Jul 24, 2001
Title vjr N2 mixed control (red, channel 2) vs N2-2 T2 (green, channel 1)
Sample type RNA
 
Channel 1
Source name N2-2 T2 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name vjr N2 mixed control (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: L3
Experimental details: synchronized wild type L3 mRNA (batch 2) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10990
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 149 144 538 627 329 315 298 214 236 450 .587 0 -1.189 .73 80 56 1.635 2.28 .612 .439 .443 1050 185 22 37 1760 1775 -1.189
2 143 138 25 321 59 277 262 188 42 230 0 -100 2.814 32 28 .424 .591 2.36 1.693 810 137 923 936 1774 1787 .759
3 150 146 166 472 212 276 260 186 152 339 .481 0 -.127 1.665 75 54 .783 1.092 1.277 .916 .83 629 137 44 57 1760 1773 -.127
4 137 132 4 290 36 270 254 182 26 208 .055 0 2.69 2.345 23 25 .111 .155 9 6.455 .164 636 137 943 956 1774 1787 2.69
5 145 140 23 258 8 262 250 179 6 185 .063 0 -2.003 2.971 24 16 2.875 4.009 .348 .249 .157 556 137 64 77 1760 1773 -2.003
6 140 133 16 281 27 265 254 182 19 202 .077 0 .275 2.269 27 18 .593 .826 1.688 1.21 .205 662 137 964 977 1777 1790 .275
7 142 139 163 365 127 251 238 171 91 262 .497 0 -.84 1.383 66 34 1.283 1.79 .779 .559 .502 668 185 81 96 1759 1774 -.84
8 141 136 108 383 122 277 261 187 87 275 .307 0 -.304 1.255 72 41 .885 1.234 1.13 .81 .623 631 137 984 997 1777 1790 -.304
9 144 141 982 437 184 267 253 181 132 313 .584 0 -2.896 .31 79 45 5.337 7.441 .187 .134 .167 700 185 101 116 1759 1774 -2.896
10 137 133 250 310 49 277 261 187 35 222 .19 0 -2.831 .484 81 26 5.102 7.114 .196 .141 .159 567 137 1004 1017 1776 1789 -2.831
11 142 141 64 322 49 291 273 196 35 231 .376 -100 2.554 38 21 1.306 1.821 .766 .549 .501 520 137 125 138 1761 1774 -.865
12 139 136 177 484 223 268 261 187 160 347 .647 0 -.146 1.581 72 56 .794 1.107 1.26 .904 1.005 580 156 1024 1038 1778 1792 -.146
13 139 137 1506 1251 979 287 272 195 702 897 .893 0 -1.101 .718 86 74 1.538 2.145 .65 .466 .607 1034 198 473 489 1767 1783 -1.101
14 136 132 71 1384 1125 275 259 186 807 993 .638 0 3.506 14.192 52 78 .063 .088 15.845 11.364 7.446 994 185 1372 1387 1779 1794 3.506
15 141 138 4353 2127 1870 277 257 184 1341 1525 .934 0 -1.699 .472 84 77 2.328 3.246 .43 .308 .403 779 231 491 508 1768 1785 -1.699
16 134 129 41 293 57 257 236 169 41 210 .084 0 -.004 2.541 43 27 .719 1.003 1.39 .997 .232 557 137 1396 1409 1780 1793 -.004
17 138 135 467 2306 2035 286 271 194 1460 1654 .93 0 1.644 4.201 69 74 .229 .32 4.358 3.125 4.097 821 250 511 529 1767 1785 1.644
18 136 133 166 632 363 281 269 193 260 453 .714 0 .649 2.398 71 67 .457 .638 2.187 1.568 1.591 642 185 1412 1427 1779 1794 .649
19 134 131 119 507 243 282 264 189 174 364 .556 0 .55 2.529 56 63 .49 .683 2.042 1.465 .927 869 287 531 550 1767 1786 .55
20 137 134 2662 3350 3086 278 264 189 2213 2403 .959 0 -.266 1.166 81 78 .863 1.203 1.159 .831 1.107 613 198 1431 1447 1778 1794 -.266

Total number of rows: 13323

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided

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