NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4445911 Query DataSets for GSM4445911
Status Public on Nov 16, 2020
Title GH Adenomas AC-2018-002
Sample type RNA
 
Source name Pituitary gland
Organism Homo sapiens
Characteristics tissue: POU1F1-Tumor
Treatment protocol With no previous treatment
Growth protocol Not applicable
Extracted molecule total RNA
Extraction protocol miRNeasy (Qiagen) extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (GeneChip WT Pico Reagent Kit, Affymetrix).
 
Hybridization protocol Following fragmentation, 5.5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Clariom D Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix 7G GeneChip scanner.
Description GH Adenomas
Adenomas-AC-2018-002
GH Adenomas
Data processing The data was analyzed with RMA using Partek Genomic Suite default analysis settings .
 
Submission date Mar 30, 2020
Last update date Nov 16, 2020
Contact name Daniel Marrero-Rodriguez
E-mail(s) dan.mar57@gmail.com
Phone +5554401021
Organization name Instituto Mexicano del Seguro Social
Department Unidad de Investigacion Medica en Enfermedades Endocrinas
Lab Laboratorio de Endocrinologia Experimental
Street address Av. Cuauhtémoc 330, Col. Doctores
City México City
State/province México City
ZIP/Postal code 06720
Country Mexico
 
Platform ID GPL23126
Series (1)
GSE147786 Transcriptome and methylome analysis reveal three cellular origins of pituitary tumors

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
TC0100006432.hg.1 4.57863
TC0100006433.hg.1 5.01226
TC0100006434.hg.1 4.0071
TC0100006435.hg.1 2.40381
TC0100006436.hg.1 3.44337
TC0100006437.hg.1 5.06205
TC0100006438.hg.1 7.61599
TC0100006439.hg.1 5.40135
TC0100006440.hg.1 3.66293
TC0100006441.hg.1 6.51622
TC0100006442.hg.1 1.57992
TC0100006443.hg.1 5.58067
TC0100006444.hg.1 4.94244
TC0100006445.hg.1 3.86937
TC0100006446.hg.1 5.42234
TC0100006447.hg.1 12.3529
TC0100006448.hg.1 6.77702
TC0100006449.hg.1 4.16493
TC0100006450.hg.1 5.00773
TC0100006451.hg.1 6.19176

Total number of rows: 135750

Table truncated, full table size 3441 Kbytes.




Supplementary file Size Download File type/resource
GSM4445911_Adenomas-AC-2018-002.CEL.gz 24.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap