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Sample GSM4445894 Query DataSets for GSM4445894
Status Public on Nov 16, 2020
Title Non-tumoral gland A19-34
Sample type RNA
 
Source name Pituitary gland
Organism Homo sapiens
Characteristics tissue: Non-tumoral gland
Treatment protocol With no previous treatment
Growth protocol Not applicable
Extracted molecule total RNA
Extraction protocol miRNeasy (Qiagen) extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (GeneChip WT Pico Reagent Kit, Affymetrix).
 
Hybridization protocol Following fragmentation, 5.5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Clariom D Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix 7G GeneChip scanner.
Description Non-tumoral gland
Control-A19-34
Non-tumoral gland
Data processing The data was analyzed with RMA using Partek Genomic Suite default analysis settings .
 
Submission date Mar 30, 2020
Last update date Nov 16, 2020
Contact name Daniel Marrero-Rodriguez
E-mail(s) dan.mar57@gmail.com
Phone +5554401021
Organization name Instituto Mexicano del Seguro Social
Department Unidad de Investigacion Medica en Enfermedades Endocrinas
Lab Laboratorio de Endocrinologia Experimental
Street address Av. Cuauhtémoc 330, Col. Doctores
City México City
State/province México City
ZIP/Postal code 06720
Country Mexico
 
Platform ID GPL23126
Series (1)
GSE147786 Transcriptome and methylome analysis reveal three cellular origins of pituitary tumors

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
TC0100006432.hg.1 4.2102
TC0100006433.hg.1 5.52285
TC0100006434.hg.1 4.7697
TC0100006435.hg.1 4.06237
TC0100006436.hg.1 4.6883
TC0100006437.hg.1 6.1746
TC0100006438.hg.1 6.79868
TC0100006439.hg.1 6.92118
TC0100006440.hg.1 4.19597
TC0100006441.hg.1 6.04777
TC0100006442.hg.1 2.12116
TC0100006443.hg.1 7.41424
TC0100006444.hg.1 6.6924
TC0100006445.hg.1 4.55359
TC0100006446.hg.1 6.10067
TC0100006447.hg.1 12.0606
TC0100006448.hg.1 7.77758
TC0100006449.hg.1 4.17885
TC0100006450.hg.1 6.1784
TC0100006451.hg.1 6.31456

Total number of rows: 135750

Table truncated, full table size 3441 Kbytes.




Supplementary file Size Download File type/resource
GSM4445894_Control-A19-34.CEL.gz 22.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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