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GEO accession:
Sample GSM44446
Query DataSets for GSM44446
Status
Public on Mar 05, 2005
Title
Tillering Shoot 1
Sample type
RNA
Channel 1
Source name
Shoots from tillering stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Tillering Shoot vs. Cultured Cell (control sample)
Keywords = rice
Keywords = shoot
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.021695205
146.0561396
143.8761839
0
8083nf08
0.214495627
107.8678373
92.96561652
0
8083ba09
-0.531951859
74.08565018
107.1192597
0
8083fh01
0.250108226
123.0581576
103.4714012
0
8084he03
0.369756489
71.80262886
55.56899606
-50
8084ff07
-0.076321266
104.529469
110.2081557
0
8084ga02
-0.34202682
111.7885756
141.6960535
0
8084gc04
0.516558654
121.9737832
85.26422422
0
8034mb04
-0.386106991
102.9832805
134.5849533
0
8034sb06
0.286623103
57.21795495
46.9083525
-50
8035fe07
0.466598989
67.92636201
49.15617297
-100
8035gc05
-0.335961297
75.15840431
94.86630359
0
8035me09
-0.188124798
97.31843556
110.8731346
0
8035lc05
0.410053398
54.2385405
40.81968245
-50
8036da12
-0.031679344
54.39045314
55.5979924
-50
8036ia01
0.229059774
85.93047374
73.31508516
0
7018lf08
0.104700323
74.05323868
68.86937143
-50
7018kd08
-0.195643862
73.10185129
83.71881001
0
7018hf09
0.001362555
94.70198667
94.6125875
0
7018oc05
0.19865979
90.42608161
78.79363866
0
Total number of rows:
14044
Table truncated, full table size
649 Kbytes
.
Supplementary data files not provided
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