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GEO accession:
Sample GSM44445
Query DataSets for GSM44445
Status
Public on Mar 05, 2005
Title
Seedling Shoot 3
Sample type
RNA
Channel 1
Source name
Shoots from seeding stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Seedling Shoot vs. Cultured Cell (control sample)
Keywords = rice
Keywords = shoot
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.491315797
1650.609822
1174.204209
0
8083nf08
0.628150594
625.4740788
404.6850358
0
8083ba09
1.340415968
928.0608509
366.4975197
0
8083fh01
1.548966781
1591.112865
543.7703505
0
8084he03
0.619027562
77.09539087
50.1975534
-50
8084ff07
0.441101407
1541.55111
1135.463488
0
8084ga02
0.201054724
995.6773855
866.15405
0
8084gc04
1.129511611
441.6209062
201.851857
0
8034mb04
-0.390047478
906.7958235
1188.298371
0
8034sb06
1.154803893
843.7183426
378.9368843
0
8035fe07
0.107546832
116.6373117
108.2586679
-100
8035gc05
0.555262558
948.7298605
645.6421638
0
8035me09
0.661283111
1277.208346
807.598857
0
8035lc05
0.712912037
90.97176881
55.50073463
-50
8036da12
-0.387306433
89.61525186
117.2121908
0
8036ia01
0.620222485
552.0118877
359.1227008
0
7018lf08
0.30032795
181.4649205
147.3618147
0
7018kd08
0.45095048
304.1620212
222.5129874
0
7018hf09
0.020753184
574.4731064
566.2684578
0
7018oc05
-0.04018058
452.4408028
465.2188722
0
Total number of rows:
14044
Table truncated, full table size
650 Kbytes
.
Supplementary data files not provided
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