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GEO accession:
Sample GSM44444
Query DataSets for GSM44444
Status
Public on Mar 05, 2005
Title
Seedling Shoot 2
Sample type
RNA
Channel 1
Source name
Shoots from seeding stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Seedling Shoot vs. Cultured Cell (control sample)
Keywords = rice
Keywords = shoot
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.699637076
2666.800141
1642.021062
0
8083nf08
0.575762883
741.1431285
497.2561788
0
8083ba09
1.533989992
1396.502842
482.2417684
0
8083fh01
1.235856253
1766.535416
750.0540256
0
8084he03
0.581672555
164.7438547
110.0799786
-50
8084ff07
0.062642074
1725.29795
1651.988284
0
8084ga02
0.087042571
1413.688696
1330.91819
0
8084gc04
0.498023211
355.0709666
251.4173458
0
8034mb04
-1.269603814
1026.777534
2475.512869
0
8034sb06
0.446912605
205.182753
150.5243474
-50
8035fe07
-0.595574911
234.1351421
353.7956722
-100
8035gc05
0.335057829
1245.124629
987.0754874
0
8035me09
0.621130316
1931.81974
1255.994516
0
8035lc05
0.322562865
201.6566101
161.2543223
-50
8036da12
-0.371432314
207.4084521
268.3111485
0
8036ia01
0.496453582
1046.46454
741.7833769
0
7018lf08
-0.283565212
320.6345493
390.2760956
0
7018kd08
0.490764906
488.8219386
347.8690021
0
7018hf09
-0.088629851
866.8650149
921.7894208
0
7018oc05
0.159510684
770.7130564
690.0415084
0
Total number of rows:
14044
Table truncated, full table size
653 Kbytes
.
Supplementary data files not provided
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