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GEO accession:
Sample GSM44440
Query DataSets for GSM44440
Status
Public on Mar 05, 2005
Title
Seedling Root 2
Sample type
RNA
Channel 1
Source name
Roots from seeding stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Root vs. Cultured Cell (control sample)
Keywords = rice
Keywords = root
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.699013856
1995.521526
1229.227532
0
8083nf08
0.478136381
608.9632918
437.1774187
0
8083ba09
0.839457333
828.9274676
463.2492166
0
8083fh01
1.016599152
1473.824578
728.4822197
0
8084he03
0.50625964
157.8795412
111.1543641
-50
8084ff07
0.038635063
1059.476824
1031.480799
0
8084ga02
-0.21754366
758.7011149
882.1813846
0
8084gc04
0.53384961
286.4065811
197.8236666
0
8034mb04
-0.073027287
823.0484799
865.7825358
0
8034sb06
0.414186734
657.7138375
493.5763572
0
8035fe07
0.032000713
201.6228619
197.1998593
-100
8035gc05
0.083868798
633.7992355
598.0048236
0
8035me09
0.232842086
850.0778762
723.379607
0
8035lc05
0.397210516
158.0758727
120.0309679
-50
8036da12
-0.931709723
172.5985952
329.2379057
0
8036ia01
0.515304853
384.8052481
269.2270973
0
7018lf08
-0.028697066
212.3720398
216.6386876
0
7018kd08
0.534746856
374.9215791
258.8007877
0
7018hf09
0.108091597
569.9329143
528.7920603
0
7018oc05
0.407840041
620.1520242
467.4402223
0
Total number of rows:
14044
Table truncated, full table size
649 Kbytes
.
Supplementary data files not provided
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