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GEO accession:
Sample GSM44439
Query DataSets for GSM44439
Status
Public on Mar 05, 2005
Title
Seedling Root 1
Sample type
RNA
Channel 1
Source name
Roots from seeding stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Root vs. Cultured Cell (control sample)
Keywords = rice
Keywords = root
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.474823887
2470.314841
1777.526462
0
8083nf08
0.14163417
699.6682122
634.2434775
0
8083ba09
0.182206369
734.1361749
647.0339104
0
8083fh01
0.80402457
1513.428237
866.8148038
0
8084he03
0.766177064
176.6026123
103.8376486
-50
8084ff07
-0.132752429
1300.733676
1426.102849
0
8084ga02
-0.180660794
1241.198247
1406.777688
0
8084gc04
0.280430014
357.8757037
294.6553759
0
8034mb04
0.1212125
1720.904601
1582.224836
0
8034sb06
0.782839512
176.2738786
102.4542045
-50
8035fe07
0.127195612
184.1042123
168.5675717
-100
8035gc05
0.169255558
1058.901947
941.6830361
0
8035me09
0.360661888
1215.994759
947.0254635
0
8035lc05
0.644980914
161.6953153
103.4043564
-50
8036da12
-0.614122631
154.3404
236.2375632
0
8036ia01
0.451102256
751.6281472
549.8037846
0
7018lf08
0.101520135
276.0021948
257.2479543
0
7018kd08
0.030902365
436.6141227
427.3613479
0
7018hf09
-0.045774489
761.7950813
786.3532001
0
7018oc05
-0.157131692
705.3404037
786.502513
0
Total number of rows:
14044
Table truncated, full table size
650 Kbytes
.
Supplementary data files not provided
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