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Sample GSM439 Query DataSets for GSM439
Status Public on Jul 24, 2001
Title vjr N2 mixed control (red, channel 2) vs bn2-1 T5 (green, channel 1)
Sample type RNA
 
Channel 1
Source name bn2-1 T5 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name vjr N2 mixed control (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 1) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10984
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 580 559 810 911 613 322 298 235 484 719 .689 0 -.743 .76 74 69 1.321 1.673 .757 .598 .578 758 137 58 71 1759 1772 -.743
2 566 548 95 333 132 220 201 159 104 263 .134 -100 .831 32 37 .72 .911 1.389 1.097 .141 810 137 956 969 1770 1783 .134
3 568 558 331 606 317 306 289 228 250 479 .539 0 -.403 .959 65 60 1.044 1.322 .958 .756 .548 636 137 78 91 1759 1772 -.403
4 577 562 160 351 161 209 190 150 127 277 .365 0 -.332 .948 39 43 .994 1.259 1.006 .795 .348 644 137 976 989 1770 1783 -.332
5 578 560 59 478 180 315 298 235 142 377 .1 0 1.269 1.323 10 30 .328 .415 3.051 2.409 .091 584 137 98 111 1759 1772 1.269
6 584 557 294 471 281 212 190 150 222 372 .54 0 -.406 .881 40 47 1.046 1.325 .956 .755 .426 681 137 996 1009 1772 1785 -.406
7 574 554 179 862 571 308 291 230 451 681 .514 0 1.333 2.191 33 68 .313 .397 3.19 2.519 1.202 680 185 116 131 1758 1773 1.333
8 576 541 111 423 226 213 197 156 178 334 .41 0 .685 1.256 18 50 .491 .622 2.036 1.608 .275 688 137 1016 1029 1773 1786 .685
9 566 545 923 661 402 285 259 205 317 522 .688 0 -1.54 .437 72 56 2.296 2.908 .436 .344 .392 698 185 134 149 1757 1772 -1.54
10 543 534 163 346 153 209 193 152 121 273 .322 0 -.432 .823 50 40 1.065 1.349 .939 .741 .301 550 137 1036 1049 1772 1785 -.432
11 569 564 104 452 200 274 252 199 158 357 .362 -100 1.165 32 41 .52 .659 1.923 1.519 .467 529 137 159 172 1760 1773 .603
12 541 523 329 417 225 212 192 152 178 329 .601 0 -.889 .692 64 54 1.462 1.852 .684 .54 .455 582 156 1057 1071 1774 1788 -.889
13 604 583 1526 1246 1031 242 215 170 814 984 .93 0 -.906 .679 75 76 1.48 1.874 .676 .534 .655 970 185 506 521 1767 1782 -.906
14 551 546 343 1131 924 221 207 163 730 893 .746 0 1.089 2.208 54 72 .371 .47 2.694 2.127 1.717 768 137 1408 1421 1776 1789 1.089
15 550 541 7150 2974 2762 232 212 167 2181 2348 .918 0 -1.713 .355 91 86 2.589 3.278 .386 .305 .391 708 198 526 542 1766 1782 -1.713
16 552 542 136 363 170 216 193 152 134 287 .492 0 -.019 1.051 35 37 .8 1.013 1.25 .987 .657 544 137 1429 1442 1776 1789 -.019
17 713 538 166 1394 1180 427 214 169 932 1101 .629 0 2.489 3.84 0 11 .141 .178 7.108 5.613 3.037 1065 287 545 564 1765 1784 2.489
18 562 546 252 630 436 211 194 153 344 497 .665 0 .45 1.333 59 64 .578 .732 1.73 1.366 1.209 633 185 1445 1460 1775 1790 .45
19 548 542 373 827 615 232 212 167 486 653 .779 0 .381 1.263 49 63 .607 .768 1.649 1.302 1.014 870 287 565 584 1765 1784 .381
20 551 534 1118 2457 2263 209 194 153 1787 1940 .873 0 .677 1.833 67 71 .494 .626 2.024 1.598 1.904 579 185 1463 1478 1775 1790 .677

Total number of rows: 13323

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided

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