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Sample GSM437957 Query DataSets for GSM437957
Status Public on Jan 13, 2010
Title R/M 90/10 rep1
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 90% Raji/10% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 90/10 rep1.Avg_NBEADS
R/M 90/10 rep1.BEAD_STDERR
R/M 90/10 rep1.Detection Pval

Data table
ID_REF VALUE R/M 90/10 rep1.Avg_NBEADS R/M 90/10 rep1.BEAD_STDERR R/M 90/10 rep1.Detection Pval
ILMN_1762337 5788.928 50 224.5581 0
ILMN_2055271 249.334 36 17.9096 0.03883495
ILMN_2383229 21.83361 22 22.19253 0.815534
ILMN_1806310 67.35989 43 12.47129 0.2588997
ILMN_1779670 20.53904 40 10.96716 0.8187702
ILMN_2321282 151.5832 45 14.88616 0.06472492
ILMN_1772582 532.1042 38 27.68192 0.01294498
ILMN_1717783 243.3949 40 20.58045 0.0420712
ILMN_1814316 2844.534 38 94.61166 0
ILMN_2359168 2896.001 36 77.18061 0
ILMN_1731507 187.5466 38 14.35145 0.04530744
ILMN_1787689 96.58727 31 13.16604 0.1229773
ILMN_1745607 26.04833 39 12.58511 0.7799353
ILMN_2136495 42.44698 22 12.51787 0.5436893
ILMN_1668111 29.31848 36 9.590938 0.7540453
ILMN_2295559 20.69377 49 8.476776 0.8187702
ILMN_1735045 5734.931 40 283.8346 0
ILMN_1680754 99.63828 33 10.81063 0.1132686
ILMN_2375184 73.021 41 12.58041 0.2006472
ILMN_1659452 102.5419 43 12.59378 0.1067961

Total number of rows: 24526

Table truncated, full table size 945 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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