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GEO accession:
Sample GSM437947
Query DataSets for GSM437947
Status
Public on Jan 13, 2010
Title
FFPE #3-50 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #3-50 rep1.Avg_NBEADS
FFPE #3-50 rep1.BEAD_STDERR
FFPE #3-50 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #3-50 rep1.Avg_NBEADS
FFPE #3-50 rep1.BEAD_STDERR
FFPE #3-50 rep1.Detection Pval
ILMN_1762337
308.7143
46
10.0581
0.003236246
ILMN_2055271
530.4058
29
7.9449
0
ILMN_2383229
98.8715
33
4.630301
0.03883495
ILMN_1806310
51.30243
40
2.216416
0.2394822
ILMN_1779670
582.5436
39
7.085034
0
ILMN_2321282
87.25987
36
2.896119
0.04854369
ILMN_1772582
134.1833
43
5.405876
0.02265372
ILMN_1717783
58.45305
36
4.263867
0.1262136
ILMN_1814316
8351.58
29
140.3073
0
ILMN_2359168
8459.654
43
155.9546
0
ILMN_1731507
723.1943
44
19.88246
0
ILMN_1787689
61.52705
40
3.016971
0.1067961
ILMN_1745607
4870.238
57
106.5109
0
ILMN_2136495
338.7588
35
7.069593
0.003236246
ILMN_1668111
142.8179
37
3.899427
0.01941748
ILMN_2295559
32.09259
49
2.498127
0.8996764
ILMN_1735045
831.8241
47
30.56858
0
ILMN_1680754
59.40116
43
3.501895
0.1229773
ILMN_2375184
121.1537
33
4.260895
0.02912621
ILMN_1659452
117.5056
44
2.966504
0.03236246
Total number of rows:
24526
Table truncated, full table size
929 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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