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GEO accession:
Sample GSM437942
Query DataSets for GSM437942
Status
Public on Jan 13, 2010
Title
FFPE #2-200 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #2-200 rep2.Avg_NBEADS
FFPE #2-200 rep2.BEAD_STDERR
FFPE #2-200 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #2-200 rep2.Avg_NBEADS
FFPE #2-200 rep2.BEAD_STDERR
FFPE #2-200 rep2.Detection Pval
ILMN_1762337
902.2914
36
41.16962
0
ILMN_2055271
366.5962
37
8.983831
0
ILMN_2383229
257.7271
41
7.463376
0.003236246
ILMN_1806310
51.25594
54
3.360036
0.210356
ILMN_1779670
1275.432
39
28.03643
0
ILMN_2321282
65.86619
53
3.051525
0.09708738
ILMN_1772582
127.8716
35
5.545436
0.02588997
ILMN_1717783
42.06888
28
4.216565
0.5080906
ILMN_1814316
9521.203
38
325.3022
0
ILMN_2359168
8527.986
48
251.3287
0
ILMN_1731507
634.0103
27
27.23396
0
ILMN_1787689
65.56893
42
4.552513
0.1003236
ILMN_1745607
3022.098
33
131.1482
0
ILMN_2136495
481.5364
37
14.75595
0
ILMN_1668111
103.6407
35
5.356241
0.03883495
ILMN_2295559
33.93089
39
3.151728
0.8543689
ILMN_1735045
957.058
47
37.51591
0
ILMN_1680754
51.64045
31
4.226591
0.2071197
ILMN_2375184
78.77776
55
3.768943
0.06148867
ILMN_1659452
82.61123
42
4.724447
0.06148867
Total number of rows:
24526
Table truncated, full table size
928 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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