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Sample GSM437748 Query DataSets for GSM437748
Status Public on Jan 13, 2010
Title MCF-7 5 ng rep1
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics cell type: Breast Adenocarcinoma (MCF-7)
input: 5 ng
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17565 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples - dilution series
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7 5 ng rep1.Avg_NBEADS
MCF-7 5 ng rep1.BEAD_STDERR
MCF-7 5 ng rep1.Detection Pval

Data table
ID_REF VALUE MCF-7 5 ng rep1.Avg_NBEADS MCF-7 5 ng rep1.BEAD_STDERR MCF-7 5 ng rep1.Detection Pval
ILMN_1762337 1040.916 31 154.8576 0
ILMN_2055271 125.6242 29 22.37775 0.003236246
ILMN_2383229 36.65159 32 7.203087 0.5533981
ILMN_1806310 36.67597 43 6.151397 0.5533981
ILMN_1779670 38.60783 40 8.130642 0.4692557
ILMN_2321282 56.65034 41 8.582093 0.05177994
ILMN_1772582 96.19785 44 12.99279 0.01941748
ILMN_1717783 337.3785 25 59.38417 0
ILMN_1814316 31.57734 45 6.800045 0.8122978
ILMN_2359168 44.63321 44 7.773787 0.2653722
ILMN_1731507 38.63763 31 8.32058 0.4692557
ILMN_1787689 49.12702 30 10.84442 0.1359223
ILMN_1745607 78.68577 43 12.46175 0.02588997
ILMN_2136495 38.29684 24 7.496698 0.4822007
ILMN_1668111 40.10998 41 6.470694 0.420712
ILMN_2295559 26.33308 42 7.887815 0.9482201
ILMN_1735045 385.8802 42 47.54406 0
ILMN_1680754 52.52935 32 9.221457 0.08090615
ILMN_2375184 50.70565 45 7.686596 0.1035599
ILMN_1659452 50.39166 42 6.287803 0.1100324

Total number of rows: 24526

Table truncated, full table size 935 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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